miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00671;mir-138;ABRO01071929.1/3084-3003 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 82

 Score =  125 bits (63), Expect = 8e-29
 Identities = 70/71 (98%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  cagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctatttcacga 60
          |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccgac-agcagcgcatcctcttacccggctatttcacga 66

                     
Query: 61 caccagggttg 71
          |||||||||||
Sbjct: 67 caccagggttg 77




>RF00671;mir-138;ABRQ01008257.1/506-426 9813:Procavia capensis
          (cape rock hyrax)
          Length = 81

 Score =  119 bits (60), Expect = 5e-27
 Identities = 69/71 (97%), Gaps = 2/71 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  cagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctatttcacga 60
          ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccgacgagcagcgcatcctctta--cggctatttcacga 65

                     
Query: 61 caccagggttg 71
          |||||||||||
Sbjct: 66 caccagggttg 76




>RF00671;mir-138;ABQO010575943.1/598-680 9315:Macropus eugenii
          (tammar wallaby)
          Length = 83

 Score =  109 bits (55), Expect = 5e-24
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  cagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctatttcacga 60
          |||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |
Sbjct: 8  cagctggtgttgtgaatcaggccgacaagcagctcatcctattacccggctatttcacca 67

                     
Query: 61 caccagggttg 71
          |||||||||||
Sbjct: 68 caccagggttg 78




>RF00671;mir-138;AAPY01619641.1/874-793 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 82

 Score =  101 bits (51), Expect = 1e-21
 Identities = 61/63 (96%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  cagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctatttcacga 60
          ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccgacgagcagcgcat-ctcttacccggcgatttcacga 66

             
Query: 61 cac 63
          |||
Sbjct: 67 cac 69




>RF00671;mir-138;AADN02051568.1/806-888 9031:Gallus gallus
          (chicken)
          Length = 83

 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                      
Query: 1  cagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctatttcacga 60
          |||||||||||||||||||||||||||   ||||| ||||  || ||||||||||||| |
Sbjct: 8  cagctggtgttgtgaatcaggccgacggcaagcgcttcctactatccggctatttcacta 67

                     
Query: 61 caccagggttg 71
          |||||||||||
Sbjct: 68 caccagggttg 78




>RF00671;mir-138;BX908772.11/124956-125038 7955:Danio rerio
          (zebrafish)
          Length = 83

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  cagctggtgttgtgaatcaggccga 25
          |||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccga 32



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 44 acccggctatttcacgacaccagggt 69
          ||||||||||||||| ||||||||||
Sbjct: 51 acccggctatttcacaacaccagggt 76




>RF00671;mir-138;BAAF04008633.1/8370-8452 8090:Oryzias latipes
          (Japanese medaka)
          Length = 83

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  cagctggtgttgtgaatcaggccga 25
          |||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccga 32




>RF00671;mir-138;AAFR03015360.1/50251-50176 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 76

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;AAGV020455273.1/411-336 9361:Dasypus novemcinctus
          (nine-banded armadillo)
          Length = 76

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;ABGA01071061.1/4521-4596 9601:Pongo abelii
          (Sumatran orangutan)
          Length = 76

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;AC124778.4/108490-108415 10090:Mus musculus
          (house mouse)
          Length = 76

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;AAKN02012252.1/96136-96211 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 76

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;AAWZ01011543.1/110956-110881 28377:Anolis
          carolinensis (green anole)
          Length = 76

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;AADN02001197.1/36532-36457 9031:Gallus gallus
          (chicken)
          Length = 76

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;CAAK05039157.1/16818-16742 7955:Danio rerio
          (zebrafish)
          Length = 77

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;CAAE01014577.1/2727918-2727843 99883:Tetraodon
          nigroviridis
          Length = 76

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;AANH01000937.1/11718-11794 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 77

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;AANH01002440.1/5358-5433 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 76

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;BAAE01294625.1/198-123 8090:Oryzias latipes
          (Japanese medaka)
          Length = 76

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;AAVX01140452.1/499-418 7868:Callorhinchus milii
          (ghost shark)
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31




>RF00671;mir-138;AAVX01130926.1/1014-940 7868:Callorhinchus milii
          (ghost shark)
          Length = 75

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagctggtgttgtgaatcaggccg 24
          ||||||||||||||||||||||||
Sbjct: 8  cagctggtgttgtgaatcaggccg 31