miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00671;mir-138;ABRO01071929.1/3084-3003 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 82
Score = 125 bits (63), Expect = 8e-29
Identities = 70/71 (98%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctatttcacga 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccgac-agcagcgcatcctcttacccggctatttcacga 66
Query: 61 caccagggttg 71
|||||||||||
Sbjct: 67 caccagggttg 77
>RF00671;mir-138;ABRQ01008257.1/506-426 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 119 bits (60), Expect = 5e-27
Identities = 69/71 (97%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctatttcacga 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccgacgagcagcgcatcctctta--cggctatttcacga 65
Query: 61 caccagggttg 71
|||||||||||
Sbjct: 66 caccagggttg 76
>RF00671;mir-138;ABQO010575943.1/598-680 9315:Macropus eugenii
(tammar wallaby)
Length = 83
Score = 109 bits (55), Expect = 5e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctatttcacga 60
|||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |
Sbjct: 8 cagctggtgttgtgaatcaggccgacaagcagctcatcctattacccggctatttcacca 67
Query: 61 caccagggttg 71
|||||||||||
Sbjct: 68 caccagggttg 78
>RF00671;mir-138;AAPY01619641.1/874-793 37347:Tupaia belangeri
(northern tree shrew)
Length = 82
Score = 101 bits (51), Expect = 1e-21
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctatttcacga 60
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccgacgagcagcgcat-ctcttacccggcgatttcacga 66
Query: 61 cac 63
|||
Sbjct: 67 cac 69
>RF00671;mir-138;AADN02051568.1/806-888 9031:Gallus gallus
(chicken)
Length = 83
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctatttcacga 60
||||||||||||||||||||||||||| ||||| |||| || ||||||||||||| |
Sbjct: 8 cagctggtgttgtgaatcaggccgacggcaagcgcttcctactatccggctatttcacta 67
Query: 61 caccagggttg 71
|||||||||||
Sbjct: 68 caccagggttg 78
>RF00671;mir-138;BX908772.11/124956-125038 7955:Danio rerio
(zebrafish)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccga 25
|||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccga 32
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 acccggctatttcacgacaccagggt 69
||||||||||||||| ||||||||||
Sbjct: 51 acccggctatttcacaacaccagggt 76
>RF00671;mir-138;BAAF04008633.1/8370-8452 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccga 25
|||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccga 32
>RF00671;mir-138;AAFR03015360.1/50251-50176 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAGV020455273.1/411-336 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;ABGA01071061.1/4521-4596 9601:Pongo abelii
(Sumatran orangutan)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AC124778.4/108490-108415 10090:Mus musculus
(house mouse)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAKN02012252.1/96136-96211 10141:Cavia porcellus
(domestic guinea pig)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAWZ01011543.1/110956-110881 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AADN02001197.1/36532-36457 9031:Gallus gallus
(chicken)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;CAAK05039157.1/16818-16742 7955:Danio rerio
(zebrafish)
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;CAAE01014577.1/2727918-2727843 99883:Tetraodon
nigroviridis
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AANH01000937.1/11718-11794 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AANH01002440.1/5358-5433 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;BAAE01294625.1/198-123 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAVX01140452.1/499-418 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAVX01130926.1/1014-940 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagctggtgttgtgaatcaggccg 24
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
