miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27576_lla-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>27741_mml-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>27742_mml-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>28456_hsa-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>28457_hsa-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>30096_ppa-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>30840_ppy-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>30841_ppy-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>31870_mmu-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>32743_rno-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>32744_rno-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>33989_ssc-mir-139:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>30230_ptr-mir-139:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaa 67
|||||||
Sbjct: 61 ggagtaa 67
>33225_bta-mir-139:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtactctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
Query: 61 ggagtaac 68
||||||||
Sbjct: 61 ggagtaac 68
>27036_eca-mir-139:mirbase
Length = 63
Score = 111 bits (56), Expect = 6e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 7 tctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttggagta 66
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 tctacagtgcacgtgtctccagtgtggctccgaggctggagacgcggccctgttggagta 63
>27037_eca-mir-139:mirbase
Length = 63
Score = 111 bits (56), Expect = 6e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 7 tctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttggagta 66
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 tctacagtgcacgtgtctccagtgtggctccgaggctggagacgcggccctgttggagta 63
>26713_cfa-mir-139:mirbase
Length = 57
Score = 103 bits (52), Expect = 1e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 8 ctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttgga 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctacagtgcacgtgtctccagtgtggctccgaggctggagacgcggccctgttgga 56
>26471_tgu-mir-139:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 5e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
Query: 62 gagtaac 68
|| ||||
Sbjct: 69 gaataac 75
>27387_mdo-mir-139:mirbase
Length = 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcacgtgtctccagtgtg 32
|||||||||||||||| ||||||||||||||
Sbjct: 1 tgtattctacagtgcatgtgtctccagtgtg 31
>34308_dre-mir-139:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcacgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcatgtgtctccagtgt 31
>25786_xtr-mir-139:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcacgtgtctccagt 29
|||||||||||||||| |||||||||||
Sbjct: 1 tgtattctacagtgcatgtgtctccagt 28
>31497_oan-mir-139:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccag 28
||||| ||||||||||| ||||||||||
Sbjct: 10 gtgtagtctacagtgcatgtgtctccag 37
