miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00703;mir-139;ABRQ01007008.1/2766-2833 9813:Procavia capensis
          (cape rock hyrax)
          Length = 68

 Score =  119 bits (60), Expect = 4e-27
 Identities = 66/68 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
          ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1  gtgtactctacagtgcacgtgtctccagtgtggctcagaggctggagacgcggccctgtt 60

                  
Query: 61 ggagtaac 68
          ||||||||
Sbjct: 61 ggagtaac 68




>RF00703;mir-139;ABQF01042738.1/622-689 59729:Taeniopygia guttata
          Length = 68

 Score = 61.9 bits (31), Expect = 9e-10
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
          |||||||||||||||| ||||||||||||||  |  | | ||||||| ||||||||||||
Sbjct: 2  tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 61

                 
Query: 62 gagtaac 68
          || ||||
Sbjct: 62 gaataac 68




>RF00703;mir-139;AAWZ01039822.1/26175-26108 28377:Anolis
          carolinensis (green anole)
          Length = 68

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 2  tgtattctacagtgcacgtgtctccagtgt 31
          |||||||||||||||| |||||||||||||
Sbjct: 2  tgtattctacagtgcatgtgtctccagtgt 31




>RF00703;mir-139;CAAK05025129.1/176-108 7955:Danio rerio
          (zebrafish)
          Length = 69

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 2  tgtattctacagtgcacgtgtctccagtgt 31
          |||||||||||||||| |||||||||||||
Sbjct: 2  tgtattctacagtgcatgtgtctccagtgt 31




>RF00703;mir-139;BAAE01265569.1/1354-1284 8090:Oryzias latipes
          (Japanese medaka)
          Length = 71

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 2  tgtattctacagtgcacgtgtctccagt 29
          |||||||||||||||| |||||||||||
Sbjct: 2  tgtattctacagtgcatgtgtctccagt 29