miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00678;mir-140;AADN02054178.1/9586-9683 9031:Gallus gallus
(chicken)
Length = 98
Score = 133 bits (67), Expect = 3e-31
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 75
Query: 61 cacggac 67
|||||||
Sbjct: 76 cacggac 82
>RF00678;mir-140;AAVX01038725.1/2937-3034 7868:Callorhinchus milii
(ghost shark)
Length = 98
Score = 131 bits (66), Expect = 1e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 5 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 79
Query: 65 gacagg 70
||||||
Sbjct: 80 gacagg 85
>RF00678;mir-140;ABRO01131757.1/4897-4800 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 98
Score = 121 bits (61), Expect = 1e-27
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 6 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 65
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 21 cagtggttttaccctatggtaggttacatcatgctgttctaccacagggtagaaccacgg 80
Query: 66 acagg 70
|||||
Sbjct: 81 acagg 85
>RF00678;mir-140;BAAF04008549.1/880-978 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 107 bits (54), Expect = 2e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 6 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 65
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 22 cagtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccacgg 81
Query: 66 ac 67
||
Sbjct: 82 ac 83
