miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00130;mir-192;AC127556.4/107222-107331 10090:Mus musculus
(house mouse)
Length = 110
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 cgtgcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 cgtgcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgc 70
Query: 61 caattccataggtcacaggtatgttcacc 89
|||||||||||||||||||||||||||||
Sbjct: 71 caattccataggtcacaggtatgttcacc 99
>RF00130;mir-192;ABRP01030089.1/479-588 132908:Pteropus vampyrus
(large flying fox)
Length = 110
Score = 137 bits (69), Expect = 3e-32
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 2 gtgcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgcc 61
||||||||||||||||||||||| |||||||||||| ||||| |||| ||||||||||||
Sbjct: 12 gtgcacagggctctgacctatgagttgacagccagtgctcttgtctcccctctggctgcc 71
Query: 62 aattccataggtcacaggtatgttc 86
|||||||||||||||||||||||||
Sbjct: 72 aattccataggtcacaggtatgttc 96
>RF00130;mir-192;ABRQ01130986.1/8285-8394 9813:Procavia capensis
(cape rock hyrax)
Length = 110
Score = 113 bits (57), Expect = 4e-25
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 2 gtgcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgcc 61
|||||||||||||||||||||||||||||||||||| | || ||| ||| ||||||||
Sbjct: 12 gtgcacagggctctgacctatgaattgacagccagtgccctcggctcccctttggctgcc 71
Query: 62 aattccataggtcacaggtatgttc 86
|||||||||||||||||||||||||
Sbjct: 72 aattccataggtcacaggtatgttc 96
>RF00130;mir-192;AANN01720898.1/1196-1090 9365:Erinaceus europaeus
(western European hedgehog)
Length = 107
Score = 107 bits (54), Expect = 2e-23
Identities = 80/88 (90%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 2 gtgcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgcc 61
|||| |||||||||||||||||| |||||||||||| | || ||| ||||||||||||
Sbjct: 12 gtgcgcagggctctgacctatgacttgacagccagtgccct---ctcccctctggctgcc 68
Query: 62 aattccataggtcacaggtatgttcacc 89
||||||||||||||||||||||||||||
Sbjct: 69 aattccataggtcacaggtatgttcacc 96
>RF00130;mir-192;ABRO01037016.1/11465-11572 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 108
Score = 97.6 bits (49), Expect = 2e-20
Identities = 78/85 (91%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 2 gtgcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgcc 61
||||||| |||||||||||||||||||||||||||| | || | ||| || |||||||||
Sbjct: 12 gtgcacaaggctctgacctatgaattgacagccagtgcgctgt-ctcccc-ctggctgcc 69
Query: 62 aattccataggtcacaggtatgttc 86
|||||||||||||||||||||||||
Sbjct: 70 aattccataggtcacaggtatgttc 94
>RF00130;mir-192;AAYZ01125558.1/348-240 9978:Ochotona princeps
(American pika)
Length = 109
Score = 97.6 bits (49), Expect = 2e-20
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 2 gtgcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgcc 61
|||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||
Sbjct: 12 gtgcacagggctctgacctatgaattgacagccagtgc-cccgtctgccctctggctgcc 70
Query: 62 aattccataggtcacaggtatgttc 86
|||| ||||||||||||||||||||
Sbjct: 71 aattgcataggtcacaggtatgttc 95
>RF00130;mir-192;AAPE01041994.1/454-563 59463:Myotis lucifugus
(little brown bat)
Length = 110
Score = 89.7 bits (45), Expect = 6e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 2 gtgcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgcc 61
|||||||||||||| ||||||||||||||||||| ||||| | || ||||||||||||
Sbjct: 12 gtgcacagggctcttccctatgaattgacagccaggtctcttgtttcccctctggctgcc 71
Query: 62 aattccataggtcacaggtatgttc 86
||| ||||||| ||||||||||||
Sbjct: 72 aatggcataggtgacaggtatgttc 96
>RF00130;mir-192;ABQO011016737.1/1874-1763 9315:Macropus eugenii
(tammar wallaby)
Length = 112
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/80 (92%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 9 gggctctgacct-atgaattgacagccagtactcttttctctcct-ctggctgccaattc 66
|||||||||||| ||||||||||||||||||||| || ||| | | ||||||||||||||
Sbjct: 20 gggctctgaccttatgaattgacagccagtactcatt-ctccctttctggctgccaattc 78
Query: 67 cataggtcacaggtatgttc 86
||||||||||||||||||||
Sbjct: 79 cataggtcacaggtatgttc 98
>RF00130;mir-192;AAIY01704218.1/882-773 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 110
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 2 gtgcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgcc 61
||||||| | |||||||||||||||||||||||||| | | ||| ||||||||||||
Sbjct: 12 gtgcacaagtctctgacctatgaattgacagccagtgccttgggctcccctctggctgcc 71
Query: 62 aattccataggtcacaggtatgtt 85
||| ||||||||||||||||||||
Sbjct: 72 aataccataggtcacaggtatgtt 95
>RF00130;mir-192;CAAE01014650.1/773661-773759 99883:Tetraodon
nigroviridis
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgacctatgaattgacagccagta 38
||||||||||||||||||||||||
Sbjct: 18 tgacctatgaattgacagccagta 41
>RF00130;mir-192;CAAB01000046.1/113260-113358 31033:Takifugu
rubripes
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgacctatgaattgacagccagta 38
||||||||||||||||||||||||
Sbjct: 18 tgacctatgaattgacagccagta 41
>RF00130;mir-192;BX248510.4/109218-109112 7955:Danio rerio
(zebrafish)
Length = 107
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgacctatgaattgacagccagt 37
|||||||||||||||||||||||
Sbjct: 24 tgacctatgaattgacagccagt 46
>RF00130;mir-192;BAAF04033818.1/3323-3429 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgacctatgaattgacagccagt 37
|||||||||||||||||||||||
Sbjct: 25 tgacctatgaattgacagccagt 47
