miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26759_cfa-mir-200a:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
Query: 61 gtctggtaacgatgttcaaaggtgacccac 90
||||||||||||||||||||||||||||||
Sbjct: 61 gtctggtaacgatgttcaaaggtgacccac 90
>32788_rno-mir-200a:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
Query: 61 gtctggtaacgatgttcaaaggtgaccca 89
|||||||||||||||||||||||||||||
Sbjct: 61 gtctggtaacgatgttcaaaggtgaccca 89
>33035_rno-mir-3548:mirbase
Length = 120
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 43
Query: 61 gtctggtaacgatgttcaaaggtgaccca 89
|||||||||||||||||||||||||||||
Sbjct: 42 gtctggtaacgatgttcaaaggtgaccca 14
>27087_eca-mir-200a:mirbase
Length = 90
Score = 155 bits (78), Expect = 6e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 1 ctgggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacact 60
Query: 61 gtctggtaacgatgttcaaaggtgacccac 90
||||||||||||||||||||||||||||||
Sbjct: 61 gtctggtaacgatgttcaaaggtgacccac 90
>33278_bta-mir-200a:mirbase
Length = 86
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
|||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 1 gggcctctgtggacatcttaccggacagtgctggatttctcggctcgactctaacactgt 60
Query: 63 ctggtaacgatgttcaaaggtgaccc 88
||||||||||||||||||||||||||
Sbjct: 61 ctggtaacgatgttcaaaggtgaccc 86
>27798_mml-mir-200a:mirbase
Length = 90
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
Query: 63 ctggtaacgatgttcaaaggtgacccac 90
||||||||||||||||||||||||||||
Sbjct: 63 ctggtaacgatgttcaaaggtgacccac 90
>28518_hsa-mir-200a:mirbase
Length = 90
Score = 131 bits (66), Expect = 9e-32
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
Query: 63 ctggtaacgatgttcaaaggtgaccc 88
||||||||||||||||||||||||||
Sbjct: 63 ctggtaacgatgttcaaaggtgaccc 88
>30279_ptr-mir-200a:mirbase
Length = 89
Score = 131 bits (66), Expect = 9e-32
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 61
Query: 63 ctggtaacgatgttcaaaggtgaccc 88
||||||||||||||||||||||||||
Sbjct: 62 ctggtaacgatgttcaaaggtgaccc 87
>30897_ppy-mir-200a:mirbase
Length = 88
Score = 131 bits (66), Expect = 9e-32
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
Query: 63 ctggtaacgatgttcaaaggtgaccc 88
||||||||||||||||||||||||||
Sbjct: 63 ctggtaacgatgttcaaaggtgaccc 88
>25991_gga-mir-200a:mirbase
Length = 87
Score = 97.6 bits (49), Expect = 1e-21
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 6 cctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgtctg 65
|||||||||||||||||| |||||||||||||||||||| | | ||||||||||||||
Sbjct: 4 cctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctg 63
Query: 66 gtaacgatgttcaaagg 82
||||||||||| |||||
Sbjct: 64 gtaacgatgtttaaagg 80
>27418_mdo-mir-200a:mirbase
Length = 86
Score = 93.7 bits (47), Expect = 2e-20
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
||||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||
Sbjct: 1 gggcctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgt 59
Query: 63 ctggtaacgatgttcaaag 81
|||||||||||||| ||||
Sbjct: 60 ctggtaacgatgtttaaag 78
>26498_tgu-mir-200a:mirbase
Length = 93
Score = 91.7 bits (46), Expect = 8e-20
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
|||| |||||||||||||||||| ||||||||||||||| || || |||||||||||
Sbjct: 8 ctggtcctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacact 67
Query: 61 gtctggtaacgatgttcaaagg 82
|||||||||||||||| |||||
Sbjct: 68 gtctggtaacgatgtttaaagg 89
>31528_oan-mir-200a:mirbase
Length = 114
Score = 69.9 bits (35), Expect = 3e-13
Identities = 65/74 (87%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 6 cctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgtctg 65
|||| ||||||||||||| ||||||||||||||| || | ||||||||||||||||
Sbjct: 20 cctccgtgggcatcttactagacagtgctggatttg--ggatctactctaacactgtctg 77
Query: 66 gtaacgatgttcaa 79
||||||||||||||
Sbjct: 78 gtaacgatgttcaa 91
>25820_xtr-mir-200a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgttcaaag 81
||||||||||||||||||||||||| ||||
Sbjct: 51 tctaacactgtctggtaacgatgtttaaag 80
>34355_dre-mir-200a:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 50 tctaacactgtctggtaacgatgtt 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 catcttaccggacagtgctgga 37
||||||||||||||||||||||
Sbjct: 14 catcttaccggacagtgctgga 35
>34628_fru-mir-200a:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 48 tctaacactgtctggtaacgatgtt 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 catcttaccggacagtgctggatt 39
||||||||| ||||||||||||||
Sbjct: 11 catcttacccgacagtgctggatt 34
>34775_tni-mir-200a:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 38 tctaacactgtctggtaacgatgtt 62
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 catcttaccggacagtgctggatt 39
||||||||| ||||||||||||||
Sbjct: 1 catcttacctgacagtgctggatt 24
>34310_dre-mir-141:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatg 74
|||||||||||||||||||||||
Sbjct: 49 tctaacactgtctggtaacgatg 71
