miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31927_mmu-mir-202:mirbase
Length = 72
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
Query: 61 ggaagatggagc 72
||||||||||||
Sbjct: 61 ggaagatggagc 72
>32792_rno-mir-202:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
Query: 61 ggaagatggagc 72
|||| |||||||
Sbjct: 61 ggaaaatggagc 72
>28521_hsa-mir-202:mirbase
Length = 110
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
Query: 61 ggaa 64
||||
Sbjct: 80 ggaa 83
>30280_ptr-mir-202:mirbase
Length = 109
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
Query: 61 ggaa 64
||||
Sbjct: 80 ggaa 83
>33281_bta-mir-202:mirbase
Length = 99
Score = 89.7 bits (45), Expect = 2e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
|||||||||||||||||||||||||||||| || ||||| |||||||||| ||| |||||
Sbjct: 11 gttcctttttcctatgcatatacttctttgagggtctggcctaaagaggtgtagggcatg 70
Query: 61 ggaagatgg 69
|||| ||||
Sbjct: 71 ggaaaatgg 79
>25993_gga-mir-202:mirbase
Length = 89
Score = 73.8 bits (37), Expect = 1e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
|||||||||||||||||||||||||||||| | | || |||||||||| |||| |||||
Sbjct: 8 gttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcatg 67
Query: 61 ggaagatgg 69
|||| ||||
Sbjct: 68 ggaaaatgg 76
>26762_cfa-mir-202:mirbase
Length = 71
Score = 71.9 bits (36), Expect = 6e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
|||||||||||||||||||||||||||||| || ||||| || ||||||| || |||||
Sbjct: 1 gttcctttttcctatgcatatacttctttgagggtctggcctgaagaggtgtaaggcatg 60
Query: 61 ggaa 64
||||
Sbjct: 61 ggaa 64
>26500_tgu-mir-202-1:mirbase
Length = 70
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 5 ctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatgggaa 64
|||||||||||||||||||||||||| | || ||||||||||||||| |||||||||
Sbjct: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
Query: 65 gatgg 69
||||
Sbjct: 61 aatgg 65
>26501_tgu-mir-202-2:mirbase
Length = 70
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 5 ctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatgggaa 64
|||||||||||||||||||||||||| | || ||||||||||||||| |||||||||
Sbjct: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
Query: 65 gatgg 69
||||
Sbjct: 61 aatgg 65
>34033_ssc-mir-202:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 3e-09
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 9 ttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatgggaa 64
|||||||||||||||||||||| || ||||| || ||||||| ||| |||||||||
Sbjct: 13 ttcctatgcatatacttctttgagggtctggcctgaagaggtgtag-gcatgggaa 67
>25822_xtr-mir-202-1:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttg 30
||||||||||||||||||||||| ||||||
Sbjct: 7 gttcctttttcctatgcatatacctctttg 36
>25823_xtr-mir-202-2:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttg 30
||||||||||||||||||||||| ||||||
Sbjct: 7 gttcctttttcctatgcatatacctctttg 36
>34358_dre-mir-202:mirbase
Length = 76
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttg 30
||||||||||||||||||||||| ||||||
Sbjct: 3 gttcctttttcctatgcatatacctctttg 32
>34630_fru-mir-202:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tcctttttcctatgcatatac 23
|||||||||||||||||||||
Sbjct: 1 tcctttttcctatgcatatac 21
>34777_tni-mir-202:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tcctttttcctatgcatatac 23
|||||||||||||||||||||
Sbjct: 1 tcctttttcctatgcatatac 21
