miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAHY01103470.1/69341-69262 10090:Mus musculus
(house mouse)
Length = 80
Score = 131 bits (66), Expect = 2e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 12 ggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacacccag 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacacccag 60
Query: 72 ctaacc 77
||||||
Sbjct: 61 ctaacc 66
>RF00641;mir-154;AAEX02019639.1/134880-134959 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 91.7 bits (46), Expect = 2e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 12 ggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacacccag 71
|||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttcatgaggatgaaacacacccag 60
Query: 72 ctaacc 77
|||||
Sbjct: 61 ttaacc 66
>RF00641;mir-154;AAGW01360474.1/8073-8152 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 81.8 bits (41), Expect = 2e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 12 ggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacacc 68
|||||| ||||||||||||||||||| |||||||||| |||||| ||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttcttggatgaggatgaaacacacc 57
>RF00641;mir-154;ABRN01448850.1/5111-5190 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 80
Score = 65.9 bits (33), Expect = 9e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 12 ggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacacc 68
|||||| || || ||||||||| ||||||||||||||| ||||| ||||||||||||
Sbjct: 1 ggtacctgaggacaggttttctaggtctctgtttctttcatgaggatgaaacacacc 57
>RF00641;mir-154;ABRQ01054366.1/1167-1246 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 65.9 bits (33), Expect = 9e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 12 ggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacacc 68
|||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 1 ggtacccgaagagaggttttctgggtttctgtttctttattgatgatgaaacacacc 57
>RF00641;mir-154;AAWR02020065.1/17831-17910 9796:Equus caballus
(horse)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 12 ggtaccggaagagaggttttctgggtctctgtttcttt 49
|||||| ||||||||||||||| |||||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctaggtctctgtttcttt 38
>RF00641;mir-154;AAQQ01350201.1/367-446 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 12 ggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacac 65
|||||| |||||||||||||||||| | ||||||| ||||||| |||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggcttgtgtttctgtgatgaggatgaaacac 54
>RF00641;mir-154;AANN01422717.1/1753-1834 9365:Erinaceus europaeus
(western European hedgehog)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 gaagagaggttttctgggtctctgtttcttt 49
|||||||||||||||||| |||||||||||
Sbjct: 8 gaagagaggttttctgggcttctgtttcttt 38
