miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32851_rno-mir-330:mirbase
Length = 97
Score = 184 bits (93), Expect = 8e-48
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 2 accctttggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatccaacgag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 accctttggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatctaacgag 60
Query: 62 caaagcacagggcctgcagagaggtagcgctctgctc 98
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaagcacagggcctgcagagaggtagcgctctgctc 97
>27843_mml-mir-330:mirbase
Length = 94
Score = 135 bits (68), Expect = 7e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 5 ctttggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatccaacgagcaa 64
||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct: 1 ctttggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaa 60
Query: 65 agcacagggcctgcagagaggtagcgctctgc 96
|||||| |||||||||||||| ||||||||||
Sbjct: 61 agcacacggcctgcagagaggcagcgctctgc 92
>27844_mml-mir-330:mirbase
Length = 94
Score = 135 bits (68), Expect = 7e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 5 ctttggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatccaacgagcaa 64
||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct: 1 ctttggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaa 60
Query: 65 agcacagggcctgcagagaggtagcgctctgc 96
|||||| |||||||||||||| ||||||||||
Sbjct: 61 agcacacggcctgcagagaggcagcgctctgc 92
>28580_hsa-mir-330:mirbase
Length = 94
Score = 135 bits (68), Expect = 7e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 5 ctttggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatccaacgagcaa 64
||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct: 1 ctttggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaa 60
Query: 65 agcacagggcctgcagagaggtagcgctctgc 96
|||||| |||||||||||||| ||||||||||
Sbjct: 61 agcacacggcctgcagagaggcagcgctctgc 92
>28581_hsa-mir-330:mirbase
Length = 94
Score = 135 bits (68), Expect = 7e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 5 ctttggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatccaacgagcaa 64
||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct: 1 ctttggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaa 60
Query: 65 agcacagggcctgcagagaggtagcgctctgc 96
|||||| |||||||||||||| ||||||||||
Sbjct: 61 agcacacggcctgcagagaggcagcgctctgc 92
>30330_ptr-mir-330:mirbase
Length = 93
Score = 135 bits (68), Expect = 7e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 5 ctttggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatccaacgagcaa 64
||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct: 1 ctttggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaa 60
Query: 65 agcacagggcctgcagagaggtagcgctctgc 96
|||||| |||||||||||||| ||||||||||
Sbjct: 61 agcacacggcctgcagagaggcagcgctctgc 92
>30948_ppy-mir-330:mirbase
Length = 94
Score = 135 bits (68), Expect = 7e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 5 ctttggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatccaacgagcaa 64
||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct: 1 ctttggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaa 60
Query: 65 agcacagggcctgcagagaggtagcgctctgc 96
|||||| |||||||||||||| ||||||||||
Sbjct: 61 agcacacggcctgcagagaggcagcgctctgc 92
>30949_ppy-mir-330:mirbase
Length = 94
Score = 135 bits (68), Expect = 7e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 5 ctttggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatccaacgagcaa 64
||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct: 1 ctttggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaa 60
Query: 65 agcacagggcctgcagagaggtagcgctctgc 96
|||||| |||||||||||||| ||||||||||
Sbjct: 61 agcacacggcctgcagagaggcagcgctctgc 92
>26802_cfa-mir-330:mirbase
Length = 89
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 5 ctttggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatccaacgagcaa 64
||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct: 1 ctttggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaa 60
Query: 65 agcacagggcctgcagagaggtagcgctc 93
|||||| |||||||||||||| |||||||
Sbjct: 61 agcacacggcctgcagagaggcagcgctc 89
>33323_bta-mir-330:mirbase
Length = 94
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 9 ggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatccaacgagcaaagca 68
||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
Query: 69 cagggcctgcagagaggtagcgctctgctc 98
|| |||||||||||||| ||||||| ||||
Sbjct: 65 cacggcctgcagagaggcagcgctcagctc 94
>27126_eca-mir-330:mirbase
Length = 64
Score = 71.9 bits (36), Expect = 8e-14
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 22 tctctgggcctgtgtcttaggctcttc-aagatccaacgagc-aaagcacagggcctgca 79
||||||||||||||||||||||||||| |||||| | ||||| |||||||| ||||||||
Sbjct: 1 tctctgggcctgtgtcttaggctcttcaaagatcaaccgagcaaaagcacacggcctgca 60
Query: 80 gaga 83
||||
Sbjct: 61 gaga 64
