miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32001_mmu-mir-335:mirbase
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 tcttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgttttt 60
Query: 61 cattattgctcctgaccccctctcatgggttatagcca 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattattgctcctgaccccctctcatgggttatagcca 98
>32853_rno-mir-335:mirbase
Length = 98
Score = 170 bits (86), Expect = 1e-43
Identities = 95/98 (96%)
Strand = Plus / Plus
Query: 1 tcttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgttttt 60
Query: 61 cattattgctcctgaccccctctcatgggttatagcca 98
||||||||||||||||| |||||||| ||||||||||
Sbjct: 61 cattattgctcctgacctcctctcatttgttatagcca 98
>33325_bta-mir-335:mirbase
Length = 92
Score = 117 bits (59), Expect = 2e-27
Identities = 78/84 (92%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 ttttgggcgggggtcaagagcaataacgaaaaatgtttg----tcataaaccgtttttca 56
Query: 63 ttattgctcctgaccccctctcat 86
||||||||||||||| ||||||||
Sbjct: 57 ttattgctcctgacctcctctcat 80
>34060_ssc-mir-335:mirbase
Length = 80
Score = 117 bits (59), Expect = 2e-27
Identities = 78/84 (92%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 2 cttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttc 61
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 cttttgggcgggggtcaagagcaataacgaaaaatgtttg----tcataaaccgtttttc 56
Query: 62 attattgctcctgaccccctctca 85
|||||||||||||||| |||||||
Sbjct: 57 attattgctcctgacctcctctca 80
>28584_hsa-mir-335:mirbase
Length = 94
Score = 109 bits (55), Expect = 4e-25
Identities = 77/84 (91%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 3 ttttgagcgggggtcaagagcaataacgaaaaatgtttg----tcataaaccgtttttca 58
Query: 63 ttattgctcctgaccccctctcat 86
||||||||||||||| ||||||||
Sbjct: 59 ttattgctcctgacctcctctcat 82
>30332_ptr-mir-335:mirbase
Length = 93
Score = 109 bits (55), Expect = 4e-25
Identities = 77/84 (91%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 2 ttttgagcgggggtcaagagcaataacgaaaaatgtttg----tcataaaccgtttttca 57
Query: 63 ttattgctcctgaccccctctcat 86
||||||||||||||| ||||||||
Sbjct: 58 ttattgctcctgacctcctctcat 81
>30952_ppy-mir-335:mirbase
Length = 92
Score = 109 bits (55), Expect = 4e-25
Identities = 77/84 (91%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 ttttgagcgggggtcaagagcaataacgaaaaatgtttg----tcataaaccgtttttca 56
Query: 63 ttattgctcctgaccccctctcat 86
||||||||||||||| ||||||||
Sbjct: 57 ttattgctcctgacctcctctcat 80
>27847_mml-mir-335:mirbase
Length = 88
Score = 105 bits (53), Expect = 6e-24
Identities = 72/78 (92%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 9 gcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttcattattg 68
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 3 gcgggggtcaagagcaataacgaaaaatgtttgt----cataaaccgtttttcattattg 58
Query: 69 ctcctgaccccctctcat 86
||||||||| ||||||||
Sbjct: 59 ctcctgacctcctctcat 76
>27128_eca-mir-335:mirbase
Length = 75
Score = 103 bits (52), Expect = 2e-23
Identities = 71/77 (92%), Gaps = 4/77 (5%)
Strand = Plus / Plus
Query: 9 gcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttcattattg 68
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 3 gcgggggtcaagagcaataacgaaaaatgtttg----tcataaaccgtttttcattattg 58
Query: 69 ctcctgaccccctctca 85
||||||||| |||||||
Sbjct: 59 ctcctgacctcctctca 75
>26804_cfa-mir-335:mirbase
Length = 58
Score = 81.8 bits (41), Expect = 8e-17
Identities = 57/62 (91%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 16 tcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttcattattgctcctga 75
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 1 tcaagagcaataacgaaaaatgtttgt----cataaaccgtttttcattattgctcctga 56
Query: 76 cc 77
||
Sbjct: 57 cc 58
