miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32002_mmu-mir-337:mirbase
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 cagtgtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtgtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagcca 60
Query: 61 ttcagctcctatatgatgcctttcttcacccccttca 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcagctcctatatgatgcctttcttcacccccttca 97
>32855_rno-mir-337:mirbase
Length = 97
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 2 agtgtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccat 60
Query: 62 tcagctcctatatgatgcctttcttcacccccttca 97
||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcagctcctatatgatgcctttcttcacccccttca 96
>33030_rno-mir-3544:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 14 agttggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctata 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 agttggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctata 29
Query: 74 tgatgcctttcttcacccccttca 97
||||||||||||||||||||||||
Sbjct: 28 tgatgcctttcttcacccccttca 5
>27848_mml-mir-337:mirbase
Length = 93
Score = 105 bits (53), Expect = 6e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 5 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 64
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 65 gctcctatatgatgcctttcttcacccccttca 97
|||||||||||||||||||||||| ||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttca 92
>27849_mml-mir-337:mirbase
Length = 93
Score = 105 bits (53), Expect = 6e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 5 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 64
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 65 gctcctatatgatgcctttcttcacccccttca 97
|||||||||||||||||||||||| ||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttca 92
>28586_hsa-mir-337:mirbase
Length = 93
Score = 105 bits (53), Expect = 6e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 5 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 64
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 65 gctcctatatgatgcctttcttcacccccttca 97
|||||||||||||||||||||||| ||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttca 92
>28585_hsa-mir-337:mirbase
Length = 93
Score = 105 bits (53), Expect = 6e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 5 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 64
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 65 gctcctatatgatgcctttcttcacccccttca 97
|||||||||||||||||||||||| ||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttca 92
>30953_ppy-mir-337:mirbase
Length = 93
Score = 105 bits (53), Expect = 6e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 5 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 64
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 65 gctcctatatgatgcctttcttcacccccttca 97
|||||||||||||||||||||||| ||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttca 92
>30954_ppy-mir-337:mirbase
Length = 93
Score = 105 bits (53), Expect = 6e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 5 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 64
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 65 gctcctatatgatgcctttcttcacccccttca 97
|||||||||||||||||||||||| ||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttca 92
>30333_ptr-mir-337:mirbase
Length = 92
Score = 103 bits (52), Expect = 2e-23
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 14 agttggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctata 73
|||||||||||||||||||| |||| ||||||||||| |||||| || |||||||||||
Sbjct: 9 agttggggggtgggaacggcttcatacaggagttgat-gcacagttatccagctcctata 67
Query: 74 tgatgcctttcttcacccccttca 97
||||||||||||||| ||||||||
Sbjct: 68 tgatgcctttcttcatccccttca 91
