miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32004_mmu-mir-338:mirbase
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 caacgctgcacaggccgtcctccccaacaatatcctggtgctgagtgggtgcacagtgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacgctgcacaggccgtcctccccaacaatatcctggtgctgagtgggtgcacagtgac 60
Query: 61 tccagcatcagtgattttgttgaagagggcagctgcca 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccagcatcagtgattttgttgaagagggcagctgcca 98
>33022_rno-mir-3065:mirbase
Length = 103
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Minus
Query: 3 acgctgcacaggccgtcctccccaacaatatcctggtgctgagtgggtgcacagtgactc 62
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 acgctgcccaggccgtcctccccaacaatatcctggtgctgagtgggtgcacagtgactc 42
Query: 63 cagcatcagtgattttgttgaagagggcagctgcca 98
||||||||||||||||||||||||||||||||||||
Sbjct: 41 cagcatcagtgattttgttgaagagggcagctgcca 6
>33023_rno-mir-3065:mirbase
Length = 103
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Minus
Query: 3 acgctgcacaggccgtcctccccaacaatatcctggtgctgagtgggtgcacagtgactc 62
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 acgctgcccaggccgtcctccccaacaatatcctggtgctgagtgggtgcacagtgactc 42
Query: 63 cagcatcagtgattttgttgaagagggcagctgcca 98
||||||||||||||||||||||||||||||||||||
Sbjct: 41 cagcatcagtgattttgttgaagagggcagctgcca 6
>32498_mmu-mir-3065:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 10 acaggccgtcctccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 acaggccgtcctccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatc 28
Query: 70 agtgattttgttgaagagggcagctgc 96
|||||||||||||||||||||||||||
Sbjct: 27 agtgattttgttgaagagggcagctgc 1
>32856_rno-mir-338:mirbase
Length = 66
Score = 131 bits (66), Expect = 1e-31
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 21 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 60
Query: 81 tgaaga 86
||||||
Sbjct: 61 tgaaga 66
>33326_bta-mir-338:mirbase
Length = 92
Score = 111 bits (56), Expect = 9e-26
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 8 gcacaggccgtcctccccaacaatatcctggtgctgagtgggtgcaca-gtgactccagc 66
|||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 1 gcacgggccgtcctccccaacaatatcctggtgctgagtgatgacacacgcaactccagc 60
Query: 67 atcagtgattttgttgaagagggcagctgcca 98
||||||||||||||||||||||||||||||||
Sbjct: 61 atcagtgattttgttgaagagggcagctgcca 92
>34061_ssc-mir-338:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 2e-20
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 15 ccgtcctccccaacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtg 73
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 1 ccgtcctccccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtg 60
Query: 74 attttgttgaagagggcag 92
|||||||||||||||||||
Sbjct: 61 attttgttgaagagggcag 79
>27442_mdo-mir-338:mirbase
Length = 89
Score = 83.8 bits (42), Expect = 2e-17
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 13 ggccgtcctccccaacaatatcctggtgctgagtgggtg-caca--gtgactccagcatc 69
|||| |||||||||||||||||||| ||||||||| | | |||| | ||||||||||||
Sbjct: 1 ggccttcctccccaacaatatcctgatgctgagtgagcggcacatggagactccagcatc 60
Query: 70 agtgattttgttgaagagggcagctgcca 98
|||||||||||||||||||| |||||||
Sbjct: 61 agtgattttgttgaagagggtggctgcca 89
>29228_hsa-mir-3065:mirbase
Length = 79
Score = 81.8 bits (41), Expect = 8e-17
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 17 gtcctccccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgat 75
|||||| |||||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct: 77 gtcctctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgat 18
Query: 76 tttgttgaagagggcag 92
|||||||||||||||||
Sbjct: 17 tttgttgaagagggcag 1
>29229_hsa-mir-3065:mirbase
Length = 79
Score = 81.8 bits (41), Expect = 8e-17
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 17 gtcctccccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgat 75
|||||| |||||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct: 77 gtcctctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgat 18
Query: 76 tttgttgaagagggcag 92
|||||||||||||||||
Sbjct: 17 tttgttgaagagggcag 1
>27850_mml-mir-338:mirbase
Length = 67
Score = 71.9 bits (36), Expect = 8e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 24 ccaacaatatcctggtgctgagtgggtgcacag-tgactccagcatcagtgattttgttg 82
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttgttg 63
Query: 83 aaga 86
||||
Sbjct: 64 aaga 67
>27851_mml-mir-338:mirbase
Length = 67
Score = 71.9 bits (36), Expect = 8e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 24 ccaacaatatcctggtgctgagtgggtgcacag-tgactccagcatcagtgattttgttg 82
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttgttg 63
Query: 83 aaga 86
||||
Sbjct: 64 aaga 67
>28587_hsa-mir-338:mirbase
Length = 67
Score = 63.9 bits (32), Expect = 2e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 24 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 82
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
Query: 83 aaga 86
||||
Sbjct: 64 aaga 67
>28588_hsa-mir-338:mirbase
Length = 67
Score = 63.9 bits (32), Expect = 2e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 24 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 82
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
Query: 83 aaga 86
||||
Sbjct: 64 aaga 67
>30334_ptr-mir-338:mirbase
Length = 66
Score = 61.9 bits (31), Expect = 8e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 24 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 82
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
Query: 83 aag 85
|||
Sbjct: 64 aag 66
>30955_ppy-mir-338:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 actccagcatcagtgattttgttgaaga 86
||||||||||||||||||||||||||||
Sbjct: 40 actccagcatcagtgattttgttgaaga 67
>30956_ppy-mir-338:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 actccagcatcagtgattttgttgaaga 86
||||||||||||||||||||||||||||
Sbjct: 40 actccagcatcagtgattttgttgaaga 67
>26805_cfa-mir-338:mirbase
Length = 59
Score = 54.0 bits (27), Expect = 2e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 26 aacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttga 83
|||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct: 1 aacaatatcctggtgctgagtgatgacacatgcaactccagcatcagtgattttgttga 59
>27131_eca-mir-338:mirbase
Length = 59
Score = 54.0 bits (27), Expect = 2e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 25 caacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttg 82
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
>27132_eca-mir-338:mirbase
Length = 59
Score = 54.0 bits (27), Expect = 2e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 25 caacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttg 82
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
>34389_dre-mir-338-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 actccagcatcagtgattttgttg 82
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34390_dre-mir-338-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 actccagcatcagtgattttgttg 82
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34391_dre-mir-338-3:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 actccagcatcagtgattttgttg 82
||||||||||||||||||||||||
Sbjct: 69 actccagcatcagtgattttgttg 92
>34392_dre-mir-338-4:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 actccagcatcagtgattttgttg 82
||||||||||||||||||||||||
Sbjct: 69 actccagcatcagtgattttgttg 92
>34649_fru-mir-338:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 actccagcatcagtgattttgttg 82
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34797_tni-mir-338:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 actccagcatcagtgattttgttg 82
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>25847_xtr-mir-338-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 ctccagcatcagtgattttgttg 82
|||||||||||||||||||||||
Sbjct: 47 ctccagcatcagtgattttgttg 69
>25848_xtr-mir-338-2:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 ctccagcatcagtgattttgttg 82
|||||||||||||||||||||||
Sbjct: 38 ctccagcatcagtgattttgttg 60
>26523_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 ctccagcatcagtgattttgttg 82
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
>26524_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 ctccagcatcagtgattttgttg 82
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
