miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32006_mmu-mir-339:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 acggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
Query: 61 ggcgacagagccggtgtccacccctgcactgtccac 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggcgacagagccggtgtccacccctgcactgtccac 96
>32857_rno-mir-339:mirbase
Length = 96
Score = 133 bits (67), Expect = 3e-32
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 1 acggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acggggtggacaccgtccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
Query: 61 ggcgacagagccggtgtccacccctgcactg 91
| |||||||||| | ||||||||||||||||
Sbjct: 61 gacgacagagccagagtccacccctgcactg 91
>32858_rno-mir-339:mirbase
Length = 96
Score = 133 bits (67), Expect = 3e-32
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 1 acggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acggggtggacaccgtccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
Query: 61 ggcgacagagccggtgtccacccctgcactg 91
| |||||||||| | ||||||||||||||||
Sbjct: 61 gacgacagagccagagtccacccctgcactg 91
>27852_mml-mir-339:mirbase
Length = 94
Score = 105 bits (53), Expect = 6e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 2 cggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcg 61
||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
Query: 62 gcgacagagccgg 74
||||||||||||
Sbjct: 61 acgacagagccgg 73
>27853_mml-mir-339:mirbase
Length = 94
Score = 105 bits (53), Expect = 6e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 2 cggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcg 61
||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
Query: 62 gcgacagagccgg 74
||||||||||||
Sbjct: 61 acgacagagccgg 73
>28589_hsa-mir-339:mirbase
Length = 94
Score = 105 bits (53), Expect = 6e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 2 cggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcg 61
||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
Query: 62 gcgacagagccgg 74
||||||||||||
Sbjct: 61 acgacagagccgg 73
>28590_hsa-mir-339:mirbase
Length = 94
Score = 105 bits (53), Expect = 6e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 2 cggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcg 61
||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
Query: 62 gcgacagagccgg 74
||||||||||||
Sbjct: 61 acgacagagccgg 73
>30335_ptr-mir-339:mirbase
Length = 93
Score = 101 bits (51), Expect = 9e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 2 cggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcg 61
||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
Query: 62 gcgacagagcc 72
||||||||||
Sbjct: 61 acgacagagcc 71
>30957_ppy-mir-339:mirbase
Length = 96
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 2 cggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcct 59
||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcct 58
>33327_bta-mir-339:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcac 37
||||||||||||||||||||||
Sbjct: 14 tccctgtcctccaggagctcac 35
>34062_ssc-mir-339:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcac 37
||||||||||||||||||||||
Sbjct: 11 tccctgtcctccaggagctcac 32
>34063_ssc-mir-339:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcac 37
||||||||||||||||||||||
Sbjct: 11 tccctgtcctccaggagctcac 32
>33328_bta-mir-339b:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctc 35
||||||||||||||||||||
Sbjct: 1 tccctgtcctccaggagctc 20
>34158_ssc-mir-4334:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctc 35
||||||||||||||||||||
Sbjct: 41 tccctgtcctccaggagctc 60
>34159_ssc-mir-4334:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctc 35
||||||||||||||||||||
Sbjct: 41 tccctgtcctccaggagctc 60
