miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32009_mmu-mir-340:mirbase
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 caattgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caattgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtggga 60
Query: 61 tccgtctcagttactttatagccatacctggtatctta 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccgtctcagttactttatagccatacctggtatctta 98
>28591_hsa-mir-340:mirbase
Length = 95
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
Query: 64 gtctcagttactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctta 95
>30336_ptr-mir-340:mirbase
Length = 94
Score = 178 bits (90), Expect = 5e-46
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
Query: 64 gtctcagttactttatagccatacctggtatctt 97
||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctt 94
>30958_ppy-mir-340:mirbase
Length = 95
Score = 174 bits (88), Expect = 8e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 11 tggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcag 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcag 67
Query: 71 ttactttatagccatacctggtatctta 98
||||||||||||||||||||||||||||
Sbjct: 68 ttactttatagccatacctggtatctta 95
>27854_mml-mir-340:mirbase
Length = 95
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgttgtttgtgggatcc 60
Query: 64 gtctcagttactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctta 95
>32859_rno-mir-340:mirbase
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 ttgtactcggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 63
Query: 64 gtctcagttactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacctggtatctta 98
>32860_rno-mir-340:mirbase
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 ttgtactcggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 63
Query: 64 gtctcagttactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacctggtatctta 98
>33329_bta-mir-340:mirbase
Length = 95
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 60
Query: 64 gtctcagttactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctta 95
>34064_ssc-mir-340:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 11 tggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcag 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcag 64
Query: 71 ttactttatagccata 86
||||||||||||||||
Sbjct: 65 ttactttatagccata 80
>26806_cfa-mir-340:mirbase
Length = 92
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
|||||| || || ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 1 ttgtacctgatgcgattataaagcaatgagactgattgtcatgtgtcggttgtgggatcc 60
Query: 64 gtctcagttactttatagccatacctggta 93
|||||||||||||||||||| | |||||||
Sbjct: 61 gtctcagttactttatagccgtgcctggta 90
>27133_eca-mir-340:mirbase
Length = 67
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 19 ttataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcagttacttta 78
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 3 ttataaagcaatgagactgattgtcatgtgtcgcttgtgggatccgtctcagttacttta 62
Query: 79 tagcc 83
|||||
Sbjct: 63 tagcc 67
>27134_eca-mir-340:mirbase
Length = 67
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 19 ttataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcagttacttta 78
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 3 ttataaagcaatgagactgattgtcatgtgtcgcttgtgggatccgtctcagttacttta 62
Query: 79 tagcc 83
|||||
Sbjct: 63 tagcc 67
