miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00761;mir-340;AAGU02785926.1/784-687 9785:Loxodonta africana
(African savanna elephant)
Length = 98
Score = 165 bits (83), Expect = 1e-40
Identities = 92/95 (96%)
Strand = Plus / Plus
Query: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
|||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 4 ttgtacctggtgtgattataaagcaatgagactgattgtcatgtgtagtttgtgggatcc 63
Query: 64 gtctcagttactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacctggtatctta 98
>RF00761;mir-340;AAYZ01269178.1/2800-2703 9978:Ochotona princeps
(American pika)
Length = 98
Score = 139 bits (70), Expect = 8e-33
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
|||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 4 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcattcatgggatcc 63
Query: 64 gtctcagttactttatagccatacct 89
||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacct 89
>RF00761;mir-340;AAFR03044187.1/7300-7390 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 16 tgattataaagcaatgagactgattgtcatat 47
|||||||||| |||||||||||||| ||||||
Sbjct: 77 tgattataaaccaatgagactgattctcatat 46
>RF00761;mir-340;ABQO010149899.1/1039-1103 9315:Macropus eugenii
(tammar wallaby)
Length = 65
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 ttataaagcaatgagactgattgtcatatgt 49
|||||||| ||||||||||||| ||||||||
Sbjct: 2 ttataaagtaatgagactgattttcatatgt 32
