miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32867_rno-mir-344a-2:mirbase
Length = 107
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 3 gcagccagggtttttaccagtcaggctcctggctagattccaggtaccagctggtacctg 62
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 gcagccagggtttttaccagtcaggctcctggctagattccaggtaccaactggtacctg 60
Query: 63 atctagccaaagcctgactgtaagc 87
|||||||||||||||||||||||||
Sbjct: 61 atctagccaaagcctgactgtaagc 85
>32865_rno-mir-344a-1:mirbase
Length = 98
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 1 ctgcagccagggtttttaccagtcaggctcctggctagattccaggtaccagctggtacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ctgcagccagagtttttaccagtcaggctcctggctagattccaggtaccaactggtacc 60
Query: 61 tgatctagccaaagcctgactgtaagc 87
|||||||||||||||||||| ||||||
Sbjct: 61 tgatctagccaaagcctgaccgtaagc 87
>32866_rno-mir-344a-1:mirbase
Length = 98
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 1 ctgcagccagggtttttaccagtcaggctcctggctagattccaggtaccagctggtacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ctgcagccagagtttttaccagtcaggctcctggctagattccaggtaccaactggtacc 60
Query: 61 tgatctagccaaagcctgactgtaagc 87
|||||||||||||||||||| ||||||
Sbjct: 61 tgatctagccaaagcctgaccgtaagc 87
>32015_mmu-mir-344-2:mirbase
Length = 80
Score = 141 bits (71), Expect = 1e-34
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 13 tttttaccagtcaggctcctggctagattccaggtaccagctggtacctgatctagccaa 72
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 60
Query: 73 agcctgactgtaagc 87
|||||||||||||||
Sbjct: 61 agcctgactgtaagc 75
>32017_mmu-mir-344c:mirbase
Length = 92
Score = 81.8 bits (41), Expect = 8e-17
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 9 agggtttttaccagtcaggctcctggctagattccaggtaccagctggtacctgatctag 68
||||||||| |||||||||| ||||||||| | ||| || |||||||||||||||||||
Sbjct: 6 agggtttttttcagtcaggctgctggctagagtacagctatcagctggtacctgatctag 65
Query: 69 ccaaagcctgactgtaa 85
||||||||||| ||||
Sbjct: 66 tcaaagcctgacagtaa 82
>32016_mmu-mir-344b:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 tagccaaagcctgactgtaag 86
|||||||||||||||||||||
Sbjct: 43 tagccaaagcctgactgtaag 63
