miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AC107641.11/81665-81571 10090:Mus musculus (house
mouse)
Length = 95
Score = 165 bits (83), Expect = 1e-40
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 ctgcagccagggtttttaccagtcaggctcctggctagattccaggtaccagctggtacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ctgcagccagggtttttaccagtcaggctcctggctagattccaggtaccaactggtacc 60
Query: 61 tgatctagccaaagcctgactgtaagc 87
|||||||||||||||||||||||||||
Sbjct: 61 tgatctagccaaagcctgactgtaagc 87
>RF00825;mir-344;CAAA01109888.1/35922-36016 10090:Mus musculus
(house mouse)
Length = 95
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 9 agggtttttaccagtcaggctcctggctagattccaggtaccagctggtacctgatctag 68
||||||||| |||||||||| ||||||||| | ||| || |||||||||||||||||||
Sbjct: 9 agggtttttttcagtcaggctgctggctagagtacagctatcagctggtacctgatctag 68
Query: 69 ccaaagcctgactgtaa 85
||||||||||| ||||
Sbjct: 69 tcaaagcctgacagtaa 85
>RF00825;mir-344;AAHX01005733.1/83790-83699 10116:Rattus
norvegicus (Norway rat)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctggtacctgatctagccaaagcctgact 81
||||||||||||||| ||||||||||||||
Sbjct: 49 gctggtacctgatctggccaaagcctgact 78
>RF00825;mir-344;AAHX01005740.1/19235-19327 10116:Rattus
norvegicus (Norway rat)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 53 ctggtacctgatctagccaaagcctgact 81
|||||||||||||| ||||||||||||||
Sbjct: 51 ctggtacctgatctggccaaagcctgact 79
>RF00825;mir-344;AC091333.6/80056-80144 10090:Mus musculus (house
mouse)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 ctgcagccagggtttttaccagtcaggctcctggcta 37
||||||||||| |||| | ||||||||||||||||||
Sbjct: 1 ctgcagccaggattttcatcagtcaggctcctggcta 37
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tagccaaagcctgactgtaagc 87
||||||||||||||||||||||
Sbjct: 60 tagccaaagcctgactgtaagc 81
