miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AC091333.6/80056-80144 10090:Mus musculus (house
          mouse)
          Length = 89

 Score =  125 bits (63), Expect = 6e-29
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atcagtcaggctcctggctaaagttcagctttcagctgcatttagccaaagcctgactgt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 atcagtcaggctcctggctaaagttcagctttcagctgcatttagccaaagcctgactgt 77

             
Query: 61 aag 63
          |||
Sbjct: 78 aag 80




>RF00825;mir-344;CAAA01109888.1/35922-36016 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                               
Query: 2  tcagtcaggctcctggctaaagttcagctttcagctg 38
          ||||||||||| ||||||| ||| ||||| |||||||
Sbjct: 19 tcagtcaggctgctggctagagtacagctatcagctg 55




>RF00825;mir-344;AC107641.11/81665-81571 10090:Mus musculus (house
          mouse)
          Length = 95

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 43 tagccaaagcctgactgtaag 63
          |||||||||||||||||||||
Sbjct: 66 tagccaaagcctgactgtaag 86