miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AAHY01149168.1/2858-2952 10090:Mus musculus
          (house mouse)
          Length = 95

 Score =  101 bits (51), Expect = 1e-21
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataaccactgcca 60
          ||||||||||||||||||||||| || ||| || ||||||||||||||||||||||||||
Sbjct: 18 atcagtcaggctgctggctatactccgggaattttctggtcctggatataaccactgcca 77

                 
Query: 61 gactgaa 67
          |||||||
Sbjct: 78 gactgaa 84




>RF00825;mir-344;AC138549.3/144160-144254 10090:Mus musculus
          (house mouse)
          Length = 95

 Score =  101 bits (51), Expect = 1e-21
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataaccactgcca 60
          ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 18 atcagtcaggctagtggttatactccaggacttatctggtcctggatataaccactgcca 77

                 
Query: 61 gactgaa 67
          |||||||
Sbjct: 78 gactgaa 84




>RF00825;mir-344;AC091333.6/185368-185462 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 95.6 bits (48), Expect = 7e-20
 Identities = 54/56 (96%)
 Strand = Plus / Plus

                                                                  
Query: 12 tgctggctatacaccaggacttatctggtcctggatataaccactgccagactgaa 67
          |||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29 tgctggctatattccaggacttatctggtcctggatataaccactgccagactgaa 84




>RF00825;mir-344;AAHX01005727.1/132954-132860 10116:Rattus
          norvegicus (Norway rat)
          Length = 95

 Score = 67.9 bits (34), Expect = 1e-11
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
          ||||||||||||||||| ||||  ||||||||| ||||||||||| ||||||||
Sbjct: 18 atcagtcaggctgctggttatattccaggacttctctggtcctgggtataacca 71




>RF00825;mir-344;AAHY01152159.1/1178-1272 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 67.9 bits (34), Expect = 1e-11
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
          |||||||||||| |||||||||  |||||||||| ||||| |||||||||||||
Sbjct: 18 atcagtcaggcttctggctatattccaggacttacctggttctggatataacca 71




>RF00825;mir-344;AC138549.3/195108-195202 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                          
Query: 7  caggctgctggctatacaccaggacttatctggtcctggatataacca 54
          ||||||||||||||||  |||| ||| |||||||||||||||||||||
Sbjct: 24 caggctgctggctatattccagaactcatctggtcctggatataacca 71




>RF00825;mir-344;AABR04128032.1/995-1089 10116:Rattus norvegicus
          (Norway rat)
          Length = 95

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
          |||||| ||||| |||||||||  |||||||| |||||||||||| ||||||||
Sbjct: 18 atcagtaaggctactggctatattccaggactcatctggtcctgggtataacca 71




>RF00825;mir-344;AABR04007982.1/6993-7087 10116:Rattus norvegicus
          (Norway rat)
          Length = 95

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
          |||||||||||||||||||||   ||| ||||||||| || |||||||||||||
Sbjct: 18 atcagtcaggctgctggctattttccatgacttatctagttctggatataacca 71




>RF00825;mir-344;CAAA01046640.1/10756-10850 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
          |||||||| ||| |||||||||   |||||||||||||||||||| ||||||||
Sbjct: 18 atcagtcaagcttctggctatatttcaggacttatctggtcctgggtataacca 71




>RF00825;mir-344;AAHY01371543.1/231-137 10090:Mus musculus (house
          mouse)
          Length = 95

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
          |||||||||||| |||||||||  ||||||| || |||||||||| ||||||||
Sbjct: 18 atcagtcaggcttctggctatattccaggacatacctggtcctgggtataacca 71




>RF00825;mir-344;AAHX01446007.1/854-775 10116:Rattus norvegicus
          (Norway rat)
          Length = 80

 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                      
Query: 7  caggctgctggctatacaccaggacttatctggtcctggatataaccactgccagactga 66
          |||||| |||||||||  ||||||| |||||||||||||||||| |||  ||| ||||||
Sbjct: 10 caggctactggctatattccaggacctatctggtcctggatatagccaaagcccgactga 69

           
Query: 67 a 67
          |
Sbjct: 70 a 70




>RF00825;mir-344;AC138549.3/121511-121605 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                      
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataaccactgcca 60
          |||||| |||||  ||||||||  |||||| ||||||||| |||| ||||||||  ||||
Sbjct: 18 atcagttaggcttgtggctatattccaggaattatctggttctgggtataaccaaagcca 77

                 
Query: 61 gactgaa 67
          |||||||
Sbjct: 78 gactgaa 84




>RF00825;mir-344;AAHY01062138.1/2745-2651 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                     
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcct 43
          ||||||| |||| |||||||||  |||||||||||||||||||
Sbjct: 18 atcagtctggcttctggctatattccaggacttatctggtcct 60




>RF00825;mir-344;AC091333.6/136861-136955 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                             
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataa 51
          |||||||||||| |||||||||   ||||||| |||||||||||| |||||
Sbjct: 18 atcagtcaggcttctggctatatttcaggactcatctggtcctgggtataa 68




>RF00825;mir-344;AABR04007982.1/14960-15054 10116:Rattus
          norvegicus (Norway rat)
          Length = 95

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
          |||| |||||||||||||||||  |||||||||| ||| ||| || ||||||||
Sbjct: 18 atcaatcaggctgctggctatattccaggacttaactgatcccgggtataacca 71




>RF00825;mir-344;AAHY01148530.1/4369-4463 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
          |||||||||||| |||||||||  || ||||||| |||||||||| || |||||
Sbjct: 18 atcagtcaggcttctggctatattcccggacttacctggtcctgggtaaaacca 71




>RF00825;mir-344;AC138549.3/196655-196749 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
          ||||||| || |||||||||||   ||||| |||||||||||||| ||||||||
Sbjct: 18 atcagtcgggttgctggctatattacaggatttatctggtcctggctataacca 71




>RF00825;mir-344;CAAA01194466.1/23523-23615 10090:Mus musculus
          (house mouse)
          Length = 93

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                      
Query: 1  atcagtcaggctgctggctatacaccaggacttatctggtcctg 44
          ||||||||||||||||||||||  |||||||   ||||||||||
Sbjct: 18 atcagtcaggctgctggctatattccaggacaagtctggtcctg 61




>RF00825;mir-344;AABR04007982.1/30556-30649 10116:Rattus
          norvegicus (Norway rat)
          Length = 94

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 25 ccaggacttatctggtcctgg 45
          |||||||||||||||||||||
Sbjct: 41 ccaggacttatctggtcctgg 61




>RF00825;mir-344;AC091333.6/176173-176264 10090:Mus musculus
          (house mouse)
          Length = 92

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  atcagtcaggctgctggctat 21
          |||||||||||||||||||||
Sbjct: 18 atcagtcaggctgctggctat 38