miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AAHY01149168.1/2858-2952 10090:Mus musculus
(house mouse)
Length = 95
Score = 101 bits (51), Expect = 1e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataaccactgcca 60
||||||||||||||||||||||| || ||| || ||||||||||||||||||||||||||
Sbjct: 18 atcagtcaggctgctggctatactccgggaattttctggtcctggatataaccactgcca 77
Query: 61 gactgaa 67
|||||||
Sbjct: 78 gactgaa 84
>RF00825;mir-344;AC138549.3/144160-144254 10090:Mus musculus
(house mouse)
Length = 95
Score = 101 bits (51), Expect = 1e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataaccactgcca 60
|||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 18 atcagtcaggctagtggttatactccaggacttatctggtcctggatataaccactgcca 77
Query: 61 gactgaa 67
|||||||
Sbjct: 78 gactgaa 84
>RF00825;mir-344;AC091333.6/185368-185462 10090:Mus musculus
(house mouse)
Length = 95
Score = 95.6 bits (48), Expect = 7e-20
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 12 tgctggctatacaccaggacttatctggtcctggatataaccactgccagactgaa 67
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29 tgctggctatattccaggacttatctggtcctggatataaccactgccagactgaa 84
>RF00825;mir-344;AAHX01005727.1/132954-132860 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 67.9 bits (34), Expect = 1e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||
Sbjct: 18 atcagtcaggctgctggttatattccaggacttctctggtcctgggtataacca 71
>RF00825;mir-344;AAHY01152159.1/1178-1272 10090:Mus musculus
(house mouse)
Length = 95
Score = 67.9 bits (34), Expect = 1e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
|||||||||||| ||||||||| |||||||||| ||||| |||||||||||||
Sbjct: 18 atcagtcaggcttctggctatattccaggacttacctggttctggatataacca 71
>RF00825;mir-344;AC138549.3/195108-195202 10090:Mus musculus
(house mouse)
Length = 95
Score = 63.9 bits (32), Expect = 2e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 7 caggctgctggctatacaccaggacttatctggtcctggatataacca 54
|||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct: 24 caggctgctggctatattccagaactcatctggtcctggatataacca 71
>RF00825;mir-344;AABR04128032.1/995-1089 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
|||||| ||||| ||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 18 atcagtaaggctactggctatattccaggactcatctggtcctgggtataacca 71
>RF00825;mir-344;AABR04007982.1/6993-7087 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
||||||||||||||||||||| ||| ||||||||| || |||||||||||||
Sbjct: 18 atcagtcaggctgctggctattttccatgacttatctagttctggatataacca 71
>RF00825;mir-344;CAAA01046640.1/10756-10850 10090:Mus musculus
(house mouse)
Length = 95
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
|||||||| ||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 18 atcagtcaagcttctggctatatttcaggacttatctggtcctgggtataacca 71
>RF00825;mir-344;AAHY01371543.1/231-137 10090:Mus musculus (house
mouse)
Length = 95
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
|||||||||||| ||||||||| ||||||| || |||||||||| ||||||||
Sbjct: 18 atcagtcaggcttctggctatattccaggacatacctggtcctgggtataacca 71
>RF00825;mir-344;AAHX01446007.1/854-775 10116:Rattus norvegicus
(Norway rat)
Length = 80
Score = 58.0 bits (29), Expect = 1e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 7 caggctgctggctatacaccaggacttatctggtcctggatataaccactgccagactga 66
|||||| ||||||||| ||||||| |||||||||||||||||| ||| ||| ||||||
Sbjct: 10 caggctactggctatattccaggacctatctggtcctggatatagccaaagcccgactga 69
Query: 67 a 67
|
Sbjct: 70 a 70
>RF00825;mir-344;AC138549.3/121511-121605 10090:Mus musculus
(house mouse)
Length = 95
Score = 54.0 bits (27), Expect = 2e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataaccactgcca 60
|||||| ||||| |||||||| |||||| ||||||||| |||| |||||||| ||||
Sbjct: 18 atcagttaggcttgtggctatattccaggaattatctggttctgggtataaccaaagcca 77
Query: 61 gactgaa 67
|||||||
Sbjct: 78 gactgaa 84
>RF00825;mir-344;AAHY01062138.1/2745-2651 10090:Mus musculus
(house mouse)
Length = 95
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcct 43
||||||| |||| ||||||||| |||||||||||||||||||
Sbjct: 18 atcagtctggcttctggctatattccaggacttatctggtcct 60
>RF00825;mir-344;AC091333.6/136861-136955 10090:Mus musculus
(house mouse)
Length = 95
Score = 54.0 bits (27), Expect = 2e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataa 51
|||||||||||| ||||||||| ||||||| |||||||||||| |||||
Sbjct: 18 atcagtcaggcttctggctatatttcaggactcatctggtcctgggtataa 68
>RF00825;mir-344;AABR04007982.1/14960-15054 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 52.0 bits (26), Expect = 9e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
|||| ||||||||||||||||| |||||||||| ||| ||| || ||||||||
Sbjct: 18 atcaatcaggctgctggctatattccaggacttaactgatcccgggtataacca 71
>RF00825;mir-344;AAHY01148530.1/4369-4463 10090:Mus musculus
(house mouse)
Length = 95
Score = 52.0 bits (26), Expect = 9e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
|||||||||||| ||||||||| || ||||||| |||||||||| || |||||
Sbjct: 18 atcagtcaggcttctggctatattcccggacttacctggtcctgggtaaaacca 71
>RF00825;mir-344;AC138549.3/196655-196749 10090:Mus musculus
(house mouse)
Length = 95
Score = 52.0 bits (26), Expect = 9e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
||||||| || ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 18 atcagtcgggttgctggctatattacaggatttatctggtcctggctataacca 71
>RF00825;mir-344;CAAA01194466.1/23523-23615 10090:Mus musculus
(house mouse)
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctg 44
|||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 18 atcagtcaggctgctggctatattccaggacaagtctggtcctg 61
>RF00825;mir-344;AABR04007982.1/30556-30649 10116:Rattus
norvegicus (Norway rat)
Length = 94
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 ccaggacttatctggtcctgg 45
|||||||||||||||||||||
Sbjct: 41 ccaggacttatctggtcctgg 61
>RF00825;mir-344;AC091333.6/176173-176264 10090:Mus musculus
(house mouse)
Length = 92
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 atcagtcaggctgctggctat 21
|||||||||||||||||||||
Sbjct: 18 atcagtcaggctgctggctat 38
