miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AC091333.6/185368-185462 10090:Mus musculus
(house mouse)
Length = 95
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 agatttcattagtctggttgctggctatattccaggacttatctggtcctggatataacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 agatttcattagtctggttgctggctatattccaggacttatctggtcctggatataacc 70
Query: 61 actgccagactgaatggtgc 80
||||||||||||||||||||
Sbjct: 71 actgccagactgaatggtgc 90
>RF00825;mir-344;AC138549.3/144160-144254 10090:Mus musculus
(house mouse)
Length = 95
Score = 103 bits (52), Expect = 3e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 1 agatttcattagtctggttgctggctatattccaggacttatctggtcctggatataacc 60
||||||||| |||| || | ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 11 agatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacc 70
Query: 61 actgccagactgaatggtgc 80
||||||||||||||||||||
Sbjct: 71 actgccagactgaatggtgc 90
>RF00825;mir-344;AAHY01149168.1/2858-2952 10090:Mus musculus
(house mouse)
Length = 95
Score = 95.6 bits (48), Expect = 8e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 1 agatttcattagtctggttgctggctatattccaggacttatctggtcctggatataacc 60
|||||| || |||| || ||||||||||| ||| ||| || |||||||||||||||||||
Sbjct: 11 agatttgatcagtcaggctgctggctatactccgggaattttctggtcctggatataacc 70
Query: 61 actgccagactgaatggtgc 80
||||||||||||||||||||
Sbjct: 71 actgccagactgaatggtgc 90
>RF00825;mir-344;AAHX01446007.1/854-775 10116:Rattus norvegicus
(Norway rat)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 21 ctggctatattccaggacttatctggtcctggatataaccactgccagactgaatggtg 79
|||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 17 ctggctatattccaggacctatctggtcctggatatagccaaagcccgactgaatggtg 75
>RF00825;mir-344;AC138549.3/121511-121605 10090:Mus musculus
(house mouse)
Length = 95
Score = 73.8 bits (37), Expect = 3e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 22 tggctatattccaggacttatctggtcctggatataaccactgccagactgaatggt 78
|||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||
Sbjct: 32 tggctatattccaggaattatctggttctgggtataaccaaagccagactgaatggt 88
>RF00825;mir-344;AC138549.3/196655-196749 10090:Mus musculus
(house mouse)
Length = 95
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 2 gatttcattagtctggttgctggctatattccaggacttatctggtcctggatataacca 61
||||| || |||| |||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 12 gatttgatcagtcgggttgctggctatattacaggatttatctggtcctggctataacca 71
>RF00825;mir-344;AC138549.3/195108-195202 10090:Mus musculus
(house mouse)
Length = 95
Score = 69.9 bits (35), Expect = 5e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 19 tgctggctatattccaggacttatctggtcctggatataacca 61
||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 29 tgctggctatattccagaactcatctggtcctggatataacca 71
>RF00825;mir-344;AABR04128032.1/995-1089 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 65.9 bits (33), Expect = 7e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 21 ctggctatattccaggacttatctggtcctggatataacca 61
||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 31 ctggctatattccaggactcatctggtcctgggtataacca 71
>RF00825;mir-344;CAAA01046640.1/10756-10850 10090:Mus musculus
(house mouse)
Length = 95
Score = 65.9 bits (33), Expect = 7e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 21 ctggctatattccaggacttatctggtcctggatataacca 61
||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 31 ctggctatatttcaggacttatctggtcctgggtataacca 71
>RF00825;mir-344;AAHY01152159.1/1178-1272 10090:Mus musculus
(house mouse)
Length = 95
Score = 65.9 bits (33), Expect = 7e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 21 ctggctatattccaggacttatctggtcctggatataacca 61
||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 31 ctggctatattccaggacttacctggttctggatataacca 71
>RF00825;mir-344;AAHY01062138.1/2745-2651 10090:Mus musculus
(house mouse)
Length = 95
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 11 agtctggttgctggctatattccaggacttatctggtcct 50
||||||| | ||||||||||||||||||||||||||||||
Sbjct: 21 agtctggcttctggctatattccaggacttatctggtcct 60
>RF00825;mir-344;AAHX01005727.1/132954-132860 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 19 tgctggctatattccaggacttatctggtcctggatataacca 61
|||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 29 tgctggttatattccaggacttctctggtcctgggtataacca 71
>RF00825;mir-344;AAHY01371543.1/231-137 10090:Mus musculus (house
mouse)
Length = 95
Score = 60.0 bits (30), Expect = 4e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 21 ctggctatattccaggacttatctggtcctggatataaccactgccagactgaatggt 78
|||||||||||||||||| || |||||||||| |||||||| ||| ||||| |||||
Sbjct: 31 ctggctatattccaggacatacctggtcctgggtataaccaaagcccgactgtatggt 88
>RF00825;mir-344;AABR04007982.1/14960-15054 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 19 tgctggctatattccaggacttatctggtcctggatataacca 61
||||||||||||||||||||||| ||| ||| || ||||||||
Sbjct: 29 tgctggctatattccaggacttaactgatcccgggtataacca 71
>RF00825;mir-344;AABR04007982.1/6993-7087 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 19 tgctggctatattccaggacttatctggtcctggatataacca 61
|||||||||| ||||| ||||||||| || |||||||||||||
Sbjct: 29 tgctggctattttccatgacttatctagttctggatataacca 71
>RF00825;mir-344;CAAA01046640.1/49863-49957 10090:Mus musculus
(house mouse)
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 11 agtctggttgctggctatattccaggacttatctggtcctggatataacca 61
||||||| | ||| ||||||||||| ||||||||| |||||| ||||||||
Sbjct: 21 agtctggcttctgcctatattccagaacttatctgatcctgggtataacca 71
>RF00825;mir-344;AABR04128032.1/4802-4897 10116:Rattus norvegicus
(Norway rat)
Length = 96
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 26 tatattccaggacttatctggtcctggatataaccactgccagactgaatggtg 79
||||||||||||||| || ||||||| |||||||| ||| ||||||||||||
Sbjct: 37 tatattccaggacttgtccagtcctgggtataaccaaagcccgactgaatggtg 90
>RF00825;mir-344;AAHY01062139.1/23440-23346 10090:Mus musculus
(house mouse)
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 21 ctggctatattccaggacttatctggtcctggatataaccactgccagactgaatggt 78
|||||||| |||||||||||| |||| ||||| |||||||| ||| ||||| |||||
Sbjct: 31 ctggctattttccaggacttagctggacctgggtataaccaaagcctgactgtatggt 88
>RF00825;mir-344;AC091333.6/136861-136955 10090:Mus musculus
(house mouse)
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 21 ctggctatattccaggacttatctggtcctggatataa 58
||||||||||| ||||||| |||||||||||| |||||
Sbjct: 31 ctggctatatttcaggactcatctggtcctgggtataa 68
>RF00825;mir-344;AAHY01148530.1/4369-4463 10090:Mus musculus
(house mouse)
Length = 95
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 21 ctggctatattccaggacttatctggtcctggatataacca 61
||||||||||||| ||||||| |||||||||| || |||||
Sbjct: 31 ctggctatattcccggacttacctggtcctgggtaaaacca 71
>RF00825;mir-344;CAAA01046640.1/38474-38564 10090:Mus musculus
(house mouse)
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 19 tgctggctatattccaggacttatctggtcctggatataacca 61
|||||||||||||| ||||| ||| |||||||| ||||||||
Sbjct: 25 tgctggctatattctaggacgtatgaggtcctgggtataacca 67
>RF00825;mir-344;AABR04007982.1/30556-30649 10116:Rattus
norvegicus (Norway rat)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tccaggacttatctggtcctgg 52
||||||||||||||||||||||
Sbjct: 40 tccaggacttatctggtcctgg 61
>RF00825;mir-344;AABR04007982.1/24208-24302 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 22 tggctatattccaggacttatctggtcctg 51
||||||||||||||||||||| || |||||
Sbjct: 32 tggctatattccaggacttatgtgatcctg 61
>RF00825;mir-344;CAAA01194466.1/23523-23615 10090:Mus musculus
(house mouse)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 2 gatttcattagtctggttgctggctatattccaggacttatctggtcctg 51
||||| || |||| || |||||||||||||||||||| ||||||||||
Sbjct: 12 gatttgatcagtcaggctgctggctatattccaggacaagtctggtcctg 61
