miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AC138549.3/144160-144254 10090:Mus musculus
(house mouse)
Length = 95
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 agatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 agatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacc 70
Query: 61 actgccagactgaatggtgc 80
||||||||||||||||||||
Sbjct: 71 actgccagactgaatggtgc 90
>RF00825;mir-344;AC091333.6/185368-185462 10090:Mus musculus
(house mouse)
Length = 95
Score = 103 bits (52), Expect = 3e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 1 agatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacc 60
||||||||| |||| || | ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 11 agatttcattagtctggttgctggctatattccaggacttatctggtcctggatataacc 70
Query: 61 actgccagactgaatggtgc 80
||||||||||||||||||||
Sbjct: 71 actgccagactgaatggtgc 90
>RF00825;mir-344;AAHY01149168.1/2858-2952 10090:Mus musculus
(house mouse)
Length = 95
Score = 103 bits (52), Expect = 3e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 1 agatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacc 60
|||||| |||||||||||| ||| |||||||| ||| || |||||||||||||||||||
Sbjct: 11 agatttgatcagtcaggctgctggctatactccgggaattttctggtcctggatataacc 70
Query: 61 actgccagactgaatggtgc 80
||||||||||||||||||||
Sbjct: 71 actgccagactgaatggtgc 90
>RF00825;mir-344;AC138549.3/121511-121605 10090:Mus musculus
(house mouse)
Length = 95
Score = 73.8 bits (37), Expect = 3e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 2 gatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacca 61
||||| |||||| ||||| |||| |||| ||||||| ||||||||| |||| ||||||||
Sbjct: 12 gatttgatcagttaggcttgtggctatattccaggaattatctggttctgggtataacca 71
Query: 62 ctgccagactgaatggt 78
|||||||||||||||
Sbjct: 72 aagccagactgaatggt 88
>RF00825;mir-344;AAHX01446007.1/854-775 10116:Rattus norvegicus
(Norway rat)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 14 caggctagtggttatactccaggacttatctggtcctggatataaccactgccagactga 73
||||||| ||| |||| |||||||| |||||||||||||||||| ||| ||| ||||||
Sbjct: 10 caggctactggctatattccaggacctatctggtcctggatatagccaaagcccgactga 69
Query: 74 atggtg 79
||||||
Sbjct: 70 atggtg 75
>RF00825;mir-344;AAHX01005727.1/132954-132860 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 67.9 bits (34), Expect = 2e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 8 atcagtcaggctagtggttatactccaggacttatctggtcctggatataacca 61
|||||||||||| |||||||| |||||||||| ||||||||||| ||||||||
Sbjct: 18 atcagtcaggctgctggttatattccaggacttctctggtcctgggtataacca 71
>RF00825;mir-344;AABR04128032.1/995-1089 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 65.9 bits (33), Expect = 7e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1 agatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacc 60
|||||| |||||| |||||| ||| |||| ||||||||| |||||||||||| |||||||
Sbjct: 11 agatttgatcagtaaggctactggctatattccaggactcatctggtcctgggtataacc 70
Query: 61 a 61
|
Sbjct: 71 a 71
>RF00825;mir-344;AAHY01152159.1/1178-1272 10090:Mus musculus
(house mouse)
Length = 95
Score = 63.9 bits (32), Expect = 3e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 2 gatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacca 61
||||| |||||||||||| ||| |||| ||||||||||| ||||| |||||||||||||
Sbjct: 12 gatttgatcagtcaggcttctggctatattccaggacttacctggttctggatataacca 71
>RF00825;mir-344;AABR04128032.1/4802-4897 10116:Rattus norvegicus
(Norway rat)
Length = 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 8 atcagtcaggctagtgg-ttatactccaggacttatctggtcctggatataaccactgcc 66
||||||||||||| ||| ||||| |||||||||| || ||||||| |||||||| |||
Sbjct: 18 atcagtcaggctactgggttatattccaggacttgtccagtcctgggtataaccaaagcc 77
Query: 67 agactgaatggtg 79
||||||||||||
Sbjct: 78 cgactgaatggtg 90
>RF00825;mir-344;CAAA01046640.1/10756-10850 10090:Mus musculus
(house mouse)
Length = 95
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 1 agatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacc 60
|||||| |||||||| ||| ||| |||| | |||||||||||||||||||| |||||||
Sbjct: 11 agattttatcagtcaagcttctggctatatttcaggacttatctggtcctgggtataacc 70
Query: 61 a 61
|
Sbjct: 71 a 71
>RF00825;mir-344;AAHY01371543.1/231-137 10090:Mus musculus (house
mouse)
Length = 95
Score = 58.0 bits (29), Expect = 2e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 2 gatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacca 61
||||| |||||||||||| ||| |||| |||||||| || |||||||||| ||||||||
Sbjct: 12 gatttgatcagtcaggcttctggctatattccaggacatacctggtcctgggtataacca 71
Query: 62 ctgccagactgaatggt 78
||| ||||| |||||
Sbjct: 72 aagcccgactgtatggt 88
>RF00825;mir-344;AABR04007982.1/24208-24302 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 1 agatttcatcagtcaggctagtggttatactccaggacttatctggtcctg 51
|||||| ||||||||||||| ||| |||| |||||||||||| || |||||
Sbjct: 11 agatttgatcagtcaggctattggctatattccaggacttatgtgatcctg 61
>RF00825;mir-344;AC091333.6/136861-136955 10090:Mus musculus
(house mouse)
Length = 95
Score = 50.1 bits (25), Expect = 4e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 2 gatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataa 58
||||| |||||||||||| ||| |||| | ||||||| |||||||||||| |||||
Sbjct: 12 gatttgatcagtcaggcttctggctatatttcaggactcatctggtcctgggtataa 68
>RF00825;mir-344;AAHY01148530.1/4369-4463 10090:Mus musculus
(house mouse)
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 2 gatttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacca 61
||||| |||||||||||| ||| |||| ||| ||||||| |||||||||| || |||||
Sbjct: 12 gatttgatcagtcaggcttctggctatattcccggacttacctggtcctgggtaaaacca 71
>RF00825;mir-344;AC138549.3/195108-195202 10090:Mus musculus
(house mouse)
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 26 tatactccaggacttatctggtcctggatataacca 61
|||| ||||| ||| |||||||||||||||||||||
Sbjct: 36 tatattccagaactcatctggtcctggatataacca 71
>RF00825;mir-344;AABR04007982.1/6993-7087 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 3 atttcatcagtcaggctagtggttatactccaggacttatctggtcctggatataacca 61
|||| |||||||||||| ||| ||| |||| ||||||||| || |||||||||||||
Sbjct: 13 atttgatcagtcaggctgctggctattttccatgacttatctagttctggatataacca 71
>RF00825;mir-344;AAHY01062138.1/2745-2651 10090:Mus musculus
(house mouse)
Length = 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 8 atcagtcaggctagtggttatactccaggacttatctggtcct 50
||||||| |||| ||| |||| ||||||||||||||||||||
Sbjct: 18 atcagtctggcttctggctatattccaggacttatctggtcct 60
>RF00825;mir-344;AABR04007982.1/30556-30649 10116:Rattus
norvegicus (Norway rat)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tccaggacttatctggtcctgg 52
||||||||||||||||||||||
Sbjct: 40 tccaggacttatctggtcctgg 61
