miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32868_rno-mir-344b-1:mirbase
Length = 98
Score = 83.8 bits (42), Expect = 1e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
|||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 12 cagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagcccga 71
Query: 61 ct 62
||
Sbjct: 72 ct 73
>32869_rno-mir-344b-1:mirbase
Length = 98
Score = 83.8 bits (42), Expect = 1e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
|||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 12 cagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagcccga 71
Query: 61 ct 62
||
Sbjct: 72 ct 73
>32870_rno-mir-344b-2:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 3e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
|||||||||| |||| ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 5 cagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagcccga 64
Query: 61 ct 62
||
Sbjct: 65 ct 66
>32871_rno-mir-344b-2:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 3e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
|||||||||| |||| ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 5 cagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagcccga 64
Query: 61 ct 62
||
Sbjct: 65 ct 66
>32019_mmu-mir-344d-2:mirbase
Length = 80
Score = 73.8 bits (37), Expect = 1e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 12 ctggctatattccaggacttacctggtcctggatataacca 52
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 21 ctggctatattccaggacttatctggtcctggatataacca 61
>32018_mmu-mir-344d-1:mirbase
Length = 69
Score = 71.9 bits (36), Expect = 5e-14
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataacca 52
|||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 3 cagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
>32020_mmu-mir-344d-3:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 1e-11
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataacca 52
|||||||||| ||| |||| ||||||||||| |||||||||||||||||||
Sbjct: 10 cagtcaggctagtggttatactccaggacttatctggtcctggatataacca 61
