miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AAHY01152159.1/1178-1272 10090:Mus musculus
(house mouse)
Length = 95
Score = 123 bits (62), Expect = 3e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 20 cagtcaggcttctggctatattccaggacttacctggttctggatataaccaaagcctga 79
Query: 61 ctatat 66
||||||
Sbjct: 80 ctatat 85
>RF00825;mir-344;AAHY01371543.1/231-137 10090:Mus musculus (house
mouse)
Length = 95
Score = 99.6 bits (50), Expect = 4e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct: 20 cagtcaggcttctggctatattccaggacatacctggtcctgggtataaccaaagcccga 79
Query: 61 ct 62
||
Sbjct: 80 ct 81
>RF00825;mir-344;CAAA01046640.1/10756-10850 10090:Mus musculus
(house mouse)
Length = 95
Score = 85.7 bits (43), Expect = 6e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctg 59
|||||| ||||||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct: 20 cagtcaagcttctggctatatttcaggacttatctggtcctgggtataaccaaagcctg 78
>RF00825;mir-344;AAHY01148530.1/4369-4463 10090:Mus musculus
(house mouse)
Length = 95
Score = 83.8 bits (42), Expect = 2e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
|||||||||||||||||||||||| |||||||||||||||||| || ||||| || | ||
Sbjct: 20 cagtcaggcttctggctatattcccggacttacctggtcctgggtaaaaccatagaccga 79
Query: 61 ctatat 66
||||||
Sbjct: 80 ctatat 85
>RF00825;mir-344;AABR04128032.1/995-1089 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 81.8 bits (41), Expect = 9e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
|||| ||||| ||||||||||||||||||| | |||||||||| |||||||||||| |||
Sbjct: 20 cagtaaggctactggctatattccaggactcatctggtcctgggtataaccaaagcatga 79
Query: 61 ctata 65
|||||
Sbjct: 80 ctata 84
>RF00825;mir-344;AAHX01446007.1/854-775 10116:Rattus norvegicus
(Norway rat)
Length = 80
Score = 75.8 bits (38), Expect = 6e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 5 caggcttctggctatattccaggacttacctggtcctggatataaccaaagcctgact 62
|||||| |||||||||||||||||| || ||||||||||||||| |||||||| ||||
Sbjct: 10 caggctactggctatattccaggacctatctggtcctggatatagccaaagcccgact 67
>RF00825;mir-344;AAHX01005727.1/132954-132860 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 75.8 bits (38), Expect = 6e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
|||||||||| |||| ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 20 cagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagcccga 79
Query: 61 ct 62
||
Sbjct: 80 ct 81
>RF00825;mir-344;AC091333.6/136861-136955 10090:Mus musculus
(house mouse)
Length = 95
Score = 75.8 bits (38), Expect = 6e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
|||||||||||||||||||||| ||||||| | |||||||||| ||||| ||||||| ||
Sbjct: 20 cagtcaggcttctggctatatttcaggactcatctggtcctgggtataatcaaagcccga 79
Query: 61 ct 62
||
Sbjct: 80 ct 81
>RF00825;mir-344;AAHY01062138.1/2745-2651 10090:Mus musculus
(house mouse)
Length = 95
Score = 73.8 bits (37), Expect = 2e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct: 20 cagtctggcttctggctatattccaggacttatctggtcctctgtttaaccaaagcctga 79
Query: 61 c 61
|
Sbjct: 80 c 80
>RF00825;mir-344;AC091333.6/185368-185462 10090:Mus musculus
(house mouse)
Length = 95
Score = 73.8 bits (37), Expect = 2e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 12 ctggctatattccaggacttacctggtcctggatataacca 52
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 31 ctggctatattccaggacttatctggtcctggatataacca 71
>RF00825;mir-344;AAHY01062139.1/23440-23346 10090:Mus musculus
(house mouse)
Length = 95
Score = 69.9 bits (35), Expect = 4e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 12 ctggctatattccaggacttacctggtcctggatataaccaaagcctgact 62
|||||||| |||||||||||| |||| ||||| ||||||||||||||||||
Sbjct: 31 ctggctattttccaggacttagctggacctgggtataaccaaagcctgact 81
>RF00825;mir-344;AC138549.3/195108-195202 10090:Mus musculus
(house mouse)
Length = 95
Score = 69.9 bits (35), Expect = 4e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 5 caggcttctggctatattccaggacttacctggtcctggatataaccaaag 55
|||||| ||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 24 caggctgctggctatattccagaactcatctggtcctggatataaccaaag 74
>RF00825;mir-344;AC138549.3/121511-121605 10090:Mus musculus
(house mouse)
Length = 95
Score = 67.9 bits (34), Expect = 1e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
|||| |||||| |||||||||||||||| ||| ||||| |||| ||||||||||||| ||
Sbjct: 20 cagttaggcttgtggctatattccaggaattatctggttctgggtataaccaaagccaga 79
Query: 61 ct 62
||
Sbjct: 80 ct 81
>RF00825;mir-344;CAAA01046640.1/49863-49957 10090:Mus musculus
(house mouse)
Length = 95
Score = 67.9 bits (34), Expect = 1e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
||||| |||||||| ||||||||||| ||||| ||| |||||| ||||||||||| |||
Sbjct: 20 cagtctggcttctgcctatattccagaacttatctgatcctgggtataaccaaaggttga 79
Query: 61 ctatat 66
||||||
Sbjct: 80 ctatat 85
>RF00825;mir-344;AABR04007982.1/14960-15054 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 65.9 bits (33), Expect = 6e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 4 tcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
||||||| ||||||||||||||||||||| ||| ||| || |||||||||| |||||
Sbjct: 23 tcaggctgctggctatattccaggacttaactgatcccgggtataaccaaaacctga 79
>RF00825;mir-344;AABR04007982.1/6993-7087 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 63.9 bits (32), Expect = 2e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagc 56
|||||||||| |||||||| ||||| |||||| || || |||||||||||||||||
Sbjct: 20 cagtcaggctgctggctattttccatgacttatctagttctggatataaccaaagc 75
>RF00825;mir-344;AC138549.3/144160-144254 10090:Mus musculus
(house mouse)
Length = 95
Score = 63.9 bits (32), Expect = 2e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataacca 52
|||||||||| ||| |||| ||||||||||| |||||||||||||||||||
Sbjct: 20 cagtcaggctagtggttatactccaggacttatctggtcctggatataacca 71
>RF00825;mir-344;AC138549.3/196655-196749 10090:Mus musculus
(house mouse)
Length = 95
Score = 61.9 bits (31), Expect = 9e-10
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 12 ctggctatattccaggacttacctggtcctggatataaccaaagcctgact 62
||||||||||| ||||| ||| |||||||||| |||||||||||| |||||
Sbjct: 31 ctggctatattacaggatttatctggtcctggctataaccaaagcatgact 81
>RF00825;mir-344;AAHY01149168.1/2858-2952 10090:Mus musculus
(house mouse)
Length = 95
Score = 56.0 bits (28), Expect = 5e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataacca 52
|||||||||| ||||||||| ||| ||| || |||||||||||||||||||
Sbjct: 20 cagtcaggctgctggctatactccgggaattttctggtcctggatataacca 71
>RF00825;mir-344;CAAA01194466.1/23523-23615 10090:Mus musculus
(house mouse)
Length = 93
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggac 29
|||||||||| ||||||||||||||||||
Sbjct: 20 cagtcaggctgctggctatattccaggac 48
>RF00825;mir-344;AABR04007982.1/24208-24302 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggactta 32
|||||||||| ||||||||||||||||||||
Sbjct: 20 cagtcaggctattggctatattccaggactta 51
>RF00825;mir-344;AABR04128032.1/4802-4897 10116:Rattus norvegicus
(Norway rat)
Length = 96
Score = 46.1 bits (23), Expect = 5e-05
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggct-atattccaggacttacctggtcctggatataaccaaagcctg 59
|||||||||| |||| | |||||||||||||| | ||||||| ||||||||||||| |
Sbjct: 20 cagtcaggctactgggttatattccaggacttgtccagtcctgggtataaccaaagcccg 79
Query: 60 act 62
|||
Sbjct: 80 act 82
>RF00825;mir-344;AABR04052925.1/6896-6990 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 44.1 bits (22), Expect = 2e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 2 agtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctg 59
||||||||| |||| ||||||||||| |||| | || ||| |||||||||||||||
Sbjct: 21 agtcaggctactggttatattccagggcttatccagttctgagtataaccaaagcctg 78
>RF00825;mir-344;AABR04064218.1/5838-5745 10116:Rattus norvegicus
(Norway rat)
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 53/62 (85%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
|||||||||| |||||| || || ||||||| ||| |||||| |||| |||||||||||
Sbjct: 20 cagtcaggctcctggct-taatctaggacttctctgttcctgggtatacccaaagcctga 78
Query: 61 ct 62
||
Sbjct: 79 ct 80
>RF00825;mir-344;AABR04007982.1/49657-49751 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 gtcaggcttctggctatattccaggactt 31
|||||||| |||| |||||||||||||||
Sbjct: 22 gtcaggctactggttatattccaggactt 50
>RF00825;mir-344;AABR04007982.1/30556-30649 10116:Rattus
norvegicus (Norway rat)
Length = 94
Score = 42.1 bits (21), Expect = 8e-04
Identities = 49/57 (85%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcc 57
|||||||||| |||||| || |||||||||| |||||||||| | || ||||||||
Sbjct: 20 cagtcaggctcctggctgaat-ccaggacttatctggtcctgggtgtacccaaagcc 75
>RF00825;mir-344;CAAA01046640.1/38474-38564 10090:Mus musculus
(house mouse)
Length = 91
Score = 42.1 bits (21), Expect = 8e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 12 ctggctatattccaggacttacctggtcctggatataaccaaagc 56
|||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 27 ctggctatattctaggacgtatgaggtcctgggtataaccaaagc 71
