miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AC117644.6/172227-172322 10090:Mus musculus
(house mouse)
Length = 96
Score = 135 bits (68), Expect = 7e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ccagtcagtctcctggctggagtccagctctaagctggttccaggctctagccaggacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 ccagtcagtctcctggctggagtccagctctaagctggttccaggctctagccaggacct 78
Query: 61 gactacaa 68
||||||||
Sbjct: 79 gactacaa 86
>RF00825;mir-344;AABR04015933.1/11010-10914 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 91.7 bits (46), Expect = 1e-18
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 3 agtcagtctcctggctggagtccagctctaagctggttccaggctctagccagg 56
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 22 agtcaggctcctggctggagtccagctctaagctggatccaggctctagccagg 75
>RF00825;mir-344;AABR04006115.1/24439-24344 10116:Rattus
norvegicus (Norway rat)
Length = 96
Score = 91.7 bits (46), Expect = 1e-18
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 3 agtcagtctcctggctggagtccagctctaagctggttccaggctctagccagg 56
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 21 agtcaggctcctggctggagtccagctctaagctggatccaggctctagccagg 74
>RF00825;mir-344;CAAA01110658.1/31741-31836 10090:Mus musculus
(house mouse)
Length = 96
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 3 agtcagtctcctggctggagtccagctctaagctggttccaggctctagccaggacctga 62
|||||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct: 21 agtcaggctcctggctggagtccagctctcagctgggtccaggctctagccagggtctga 80
Query: 63 ctaca 67
|||||
Sbjct: 81 ctaca 85
>RF00825;mir-344;AAHY01062164.1/19497-19401 10090:Mus musculus
(house mouse)
Length = 97
Score = 79.8 bits (40), Expect = 4e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 1 ccagtcagtctcctggctggagtccagctctaagctggttccaggctctagccagg 56
|||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct: 19 ccagtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccagg 74
>RF00825;mir-344;AAHY01062178.1/23704-23609 10090:Mus musculus
(house mouse)
Length = 96
Score = 63.9 bits (32), Expect = 2e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 3 agtcagtctcctggctggagtccagctctaagctggttccaggctctagccaggacctga 62
|||||| ||||||||||||| |||||||| ||||| ||||||||| | |||||| |||||
Sbjct: 21 agtcaggctcctggctggaggccagctctcagctgcttccaggctgtggccagggcctga 80
>RF00825;mir-344;CAAA01010483.1/3830-3925 10090:Mus musculus
(house mouse)
Length = 96
Score = 54.0 bits (27), Expect = 2e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 2 cagtcagtctcctggctggagtccagctctaagctggttccaggctctagc 52
||||||| || ||||||||||||||||||| | |||| ||||| |||||||
Sbjct: 20 cagtcaggcttctggctggagtccagctctcaactggatccagtctctagc 70
>RF00825;mir-344;AC091333.6/101672-101766 10090:Mus musculus
(house mouse)
Length = 95
Score = 44.1 bits (22), Expect = 2e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 1 ccagtcagtctcctggctggagtccagctctaagctggttccaggctctagcca 54
||||||| ||||||| ||| |||| |||| | ||||||||||||||||||||
Sbjct: 18 ccagtcaagctcctggatggtatccatctctcacctggttccaggctctagcca 71
