miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AAHY01062164.1/19497-19401 10090:Mus musculus
          (house mouse)
          Length = 97

 Score =  141 bits (71), Expect = 1e-33
 Identities = 71/71 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgccagtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccagggg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tgccagtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccagggg 76

                     
Query: 61 cttgactgcaa 71
          |||||||||||
Sbjct: 77 cttgactgcaa 87




>RF00825;mir-344;CAAA01110658.1/31741-31836 10090:Mus musculus
          (house mouse)
          Length = 96

 Score = 85.7 bits (43), Expect = 7e-17
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                 
Query: 5  agtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccaggg 59
          ||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct: 21 agtcaggctcctggctggagtccagctctcagctgggtccaggctctagccaggg 75




>RF00825;mir-344;AABR04015933.1/11010-10914 10116:Rattus
          norvegicus (Norway rat)
          Length = 97

 Score = 83.8 bits (42), Expect = 3e-16
 Identities = 61/66 (92%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  agtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccaggggcttg 64
          ||||||||||||||| ||||||| ||||| |||||| ||||||||||||||| |||||||
Sbjct: 22 agtcaggctcctggctggagtccagctctaagctggatccaggctctagcca-gggcttg 80

                
Query: 65 actgca 70
          ||||||
Sbjct: 81 actgca 86




>RF00825;mir-344;AABR04006115.1/24439-24344 10116:Rattus
          norvegicus (Norway rat)
          Length = 96

 Score = 83.8 bits (42), Expect = 3e-16
 Identities = 61/66 (92%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  agtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccaggggcttg 64
          ||||||||||||||| ||||||| ||||| |||||| ||||||||||||||| |||||||
Sbjct: 21 agtcaggctcctggctggagtccagctctaagctggatccaggctctagcca-gggcttg 79

                
Query: 65 actgca 70
          ||||||
Sbjct: 80 actgca 85




>RF00825;mir-344;AC117644.6/172227-172322 10090:Mus musculus
          (house mouse)
          Length = 96

 Score = 83.8 bits (42), Expect = 3e-16
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                    
Query: 1  tgccagtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccagg 58
          |||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct: 17 tgccagtcagtctcctggctggagtccagctctaagctggttccaggctctagccagg 74




>RF00825;mir-344;AAHY01062178.1/23704-23609 10090:Mus musculus
          (house mouse)
          Length = 96

 Score = 61.9 bits (31), Expect = 9e-10
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                 
Query: 5  agtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccaggg 59
          ||||||||||||||| |||| || ||||||||||| ||||||||| | |||||||
Sbjct: 21 agtcaggctcctggctggaggccagctctcagctgcttccaggctgtggccaggg 75




>RF00825;mir-344;AC091333.6/101672-101766 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                   
Query: 30 ctctcagctggttccaggctctagccaggggcttgactgca 70
          |||||| ||||||||||||||||||||  ||||||||||||
Sbjct: 45 ctctcacctggttccaggctctagcca-tggcttgactgca 84