miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AAHY01062164.1/19497-19401 10090:Mus musculus
(house mouse)
Length = 97
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgccagtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tgccagtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccagggg 76
Query: 61 cttgactgcaa 71
|||||||||||
Sbjct: 77 cttgactgcaa 87
>RF00825;mir-344;CAAA01110658.1/31741-31836 10090:Mus musculus
(house mouse)
Length = 96
Score = 85.7 bits (43), Expect = 7e-17
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 5 agtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccaggg 59
||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct: 21 agtcaggctcctggctggagtccagctctcagctgggtccaggctctagccaggg 75
>RF00825;mir-344;AABR04015933.1/11010-10914 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 83.8 bits (42), Expect = 3e-16
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 5 agtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccaggggcttg 64
||||||||||||||| ||||||| ||||| |||||| ||||||||||||||| |||||||
Sbjct: 22 agtcaggctcctggctggagtccagctctaagctggatccaggctctagcca-gggcttg 80
Query: 65 actgca 70
||||||
Sbjct: 81 actgca 86
>RF00825;mir-344;AABR04006115.1/24439-24344 10116:Rattus
norvegicus (Norway rat)
Length = 96
Score = 83.8 bits (42), Expect = 3e-16
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 5 agtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccaggggcttg 64
||||||||||||||| ||||||| ||||| |||||| ||||||||||||||| |||||||
Sbjct: 21 agtcaggctcctggctggagtccagctctaagctggatccaggctctagcca-gggcttg 79
Query: 65 actgca 70
||||||
Sbjct: 80 actgca 85
>RF00825;mir-344;AC117644.6/172227-172322 10090:Mus musculus
(house mouse)
Length = 96
Score = 83.8 bits (42), Expect = 3e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 tgccagtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccagg 58
|||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct: 17 tgccagtcagtctcctggctggagtccagctctaagctggttccaggctctagccagg 74
>RF00825;mir-344;AAHY01062178.1/23704-23609 10090:Mus musculus
(house mouse)
Length = 96
Score = 61.9 bits (31), Expect = 9e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 5 agtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccaggg 59
||||||||||||||| |||| || ||||||||||| ||||||||| | |||||||
Sbjct: 21 agtcaggctcctggctggaggccagctctcagctgcttccaggctgtggccaggg 75
>RF00825;mir-344;AC091333.6/101672-101766 10090:Mus musculus
(house mouse)
Length = 95
Score = 50.1 bits (25), Expect = 4e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 30 ctctcagctggttccaggctctagccaggggcttgactgca 70
|||||| |||||||||||||||||||| ||||||||||||
Sbjct: 45 ctctcacctggttccaggctctagcca-tggcttgactgca 84
