miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00758;mir-346;AABR04015636.1/21624-21527 10116:Rattus
norvegicus (Norway rat)
Length = 98
Score = 178 bits (90), Expect = 9e-45
Identities = 96/98 (97%)
Strand = Plus / Plus
Query: 1 tctgtgttgggcgtctgtctgcccgagtgcctgcctctctgttgctctgaaggaggcagg 60
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtgttgggcatctgtctgcctgagtgcctgcctctctgttgctctgaaggaggcagg 60
Query: 61 ggctgggcctgcagctgcctgggcagagctgctccttc 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggctgggcctgcagctgcctgggcagagctgctccttc 98
>RF00758;mir-346;ABRT010507805.1/103-1 9478:Tarsius syrichta
(Philippine tarsier)
Length = 103
Score = 137 bits (69), Expect = 3e-32
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 1 tctgtgttgggcgtctgtctgcccgagtgcctgcctctctgttgctctgaaggaggcagg 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtgttgggcgtctgtctgcccgcatgcctgcctctctgttgctctgaaggaggcagg 60
Query: 61 ggctgggcctgcagctg 77
|||||||||||||||||
Sbjct: 61 ggctgggcctgcagctg 77
>RF00758;mir-346;AAIY01391882.1/1153-1058 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 96
Score = 95.6 bits (48), Expect = 1e-19
Identities = 86/96 (89%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 1 tctgtgttgggcgtctgtctgcccgagtgcctgcctctctgttgctctgaaggaggcagg 60
||||||||||||| |||||||||| |||||||||||||| | |||||||||||||||
Sbjct: 1 tctgtgttgggcgcctgtctgcccacctgcctgcctctctg-tcatctgaaggaggcagg 59
Query: 61 ggctgggcctgcagctgcctgggcagagctgctcct 96
||| ||| ||||||||||||||||||||| ||||||
Sbjct: 60 ggccggg-ctgcagctgcctgggcagagcggctcct 94
>RF00758;mir-346;ABRQ01820904.1/910-1009 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 81.8 bits (41), Expect = 2e-15
Identities = 64/69 (92%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 28 tgcctgcctctctgttgctctgaaggaggcaggggctgggcctgcagctgcctgggcaga 87
|||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 32 tgcctgtctctctgtc-ctctgaaggaggcaggggctggg-ctgcagctgcctgggcaga 89
Query: 88 gctgctcct 96
|| ||||||
Sbjct: 90 gccgctcct 98
