miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00806;mir-350;AAGU02328088.1/341-243 9785:Loxodonta africana
          (African savanna elephant)
          Length = 99

 Score =  159 bits (80), Expect = 8e-39
 Identities = 89/92 (96%)
 Strand = Plus / Plus

                                                                      
Query: 8  ttgctcctacaagagtaaagtgcatgcgctttgggacagtgaggaaaataatgttcacaa 67
          |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 8  ttgctcctacaagagtaaagtgcacgcgctttgggacagtgaggaaaatattgttcacaa 67

                                          
Query: 68 agcccatacactttcaccctttaggagagttg 99
          |||||||||||||| |||||||||||||||||
Sbjct: 68 agcccatacacttttaccctttaggagagttg 99




>RF00806;mir-350;AAWR02039510.1/16310-16408 9796:Equus caballus
          (horse)
          Length = 99

 Score =  129 bits (65), Expect = 7e-30
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                      
Query: 8  ttgctcctacaagagtaaagtgcatgcgctttgggacagtgaggaaaataatgttcacaa 67
          ||||||||| |||||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct: 8  ttgctcctataagagtaaagtgcacgcgctttgggacagtgaggaagatgatgttcacaa 67

                                       
Query: 68 agcccatacactttcaccctttaggagag 96
          |||||||||||||| || |||||||||||
Sbjct: 68 agcccatacacttttactctttaggagag 96




>RF00806;mir-350;ABRQ01049184.1/11230-11132 9813:Procavia capensis
          (cape rock hyrax)
          Length = 99

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                      
Query: 8  ttgctcctacaagagtaaagtgcatgcgctttgggacagtgaggaaaataatgttcacaa 67
          |||||| | ||||||| ||||||| |||||||||||| |||||||||| | || ||||||
Sbjct: 8  ttgctcattcaagagtgaagtgcacgcgctttgggactgtgaggaaaacattgctcacaa 67

                               
Query: 68 agcccatacactttcaccctt 88
          |||||||||||||||||||||
Sbjct: 68 agcccatacactttcaccctt 88




>RF00806;mir-350;AAFC03070376.1/47198-47100 9913:Bos taurus
          (cattle)
          Length = 99

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                      
Query: 8  ttgctcctacaagagtaaagtgcatgcgctttgggacagtgaggaaaataatgttcacaa 67
          |||||||| ||||||| || |||| | ||||||||||||||| || |||||||| |||||
Sbjct: 8  ttgctcctgcaagagtgaaatgcacgtgctttgggacagtgaagacaataatgtacacaa 67

                                          
Query: 68 agcccatacactttcaccctttaggagagttg 99
          || ||||||||||| |||| ||||||||||||
Sbjct: 68 agtccatacacttttacccattaggagagttg 99




>RF00806;mir-350;ABRR01009120.1/3250-3152 30538:Lama pacos
          (alpaca)
          Length = 99

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                      
Query: 9  tgctcctacaagagtaaagtgcatgcgctttgggacagtgaggaaaataatgttcacaaa 68
          ||||||| ||||  || ||||||||||||||| || ||||| |||||||||||| |||||
Sbjct: 9  tgctcctgcaagcatagagtgcatgcgctttgagagagtgaagaaaataatgtttacaaa 68

                                         
Query: 69 gcccatacactttcaccctttaggagagttg 99
          |||||||| |||| |||||| |||| |||||
Sbjct: 69 gcccatacgcttttacccttcaggaaagttg 99




>RF00806;mir-350;AAPY01728940.1/2419-2322 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 98

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 77/89 (86%), Gaps = 4/89 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  agatgccttgctcctacaagagtaaa-gtgcatgcgctttgggacagt-gaggaaaataa 58
          ||||||||||||||||| |||||||| |||||   | ||||||||||| || || |||||
Sbjct: 1  agatgccttgctcctacgagagtaaacgtgca-ctgatttgggacagtggaagagaataa 59

                                       
Query: 59 tgttcacaaagcccatacactttcaccct 87
          ||||||| ||| ||||||||||| |||||
Sbjct: 60 tgttcac-aaggccatacacttttaccct 87