miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00659;mir-365;AADN02023913.1/98870-98778 9031:Gallus gallus
(chicken)
Length = 93
Score = 157 bits (79), Expect = 3e-38
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 1 accgcagggaaaatgagggacttttgggggcagatgtgtttccattccgctatcataatg 60
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 1 accgcagggaaaatgagggacttttgggggcagatgtgtttccattacactatcataatg 60
Query: 61 cccctaaaaatccttattgctcttgca 87
|||||||||||||||||||||||||||
Sbjct: 61 cccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;CU138533.13/80864-80956 7955:Danio rerio
(zebrafish)
Length = 93
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 2 ccgcagggaaaatgagggacttttgggggcagatgtgtttccattccgctatcataatgc 61
||||||||| |||||||| |||||||||||| |||||||| || | | ||||||||||
Sbjct: 2 ccgcagggagaatgaggggcttttgggggcacttgtgtttcagtttcaccatcataatgc 61
Query: 62 ccctaaaaatccttattgctcttgca 87
||||||||||||||||||||||||||
Sbjct: 62 ccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;BAAE01286148.1/272-364 8090:Oryzias latipes
(Japanese medaka)
Length = 93
Score = 75.8 bits (38), Expect = 8e-14
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 10 aaaatgagggacttttgggggcagatgtgtttccattccgctatcataatgcccctaaaa 69
|||||||||||||||| ||||||| ||||||| | | | |||||||||||||||||
Sbjct: 10 aaaatgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaaa 69
Query: 70 atccttattgctcttgca 87
||||||||||||||||||
Sbjct: 70 atccttattgctcttgca 87
>RF00659;mir-365;AAPE01619298.1/1229-1137 59463:Myotis lucifugus
(little brown bat)
Length = 93
Score = 69.9 bits (35), Expect = 5e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 53 tcataatgcccctaaaaatccttattgctcttgca 87
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;AAIY01424277.1/585-676 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 tcataatgcccctaaaaatccttattgctcttgca 87
||||||||||||||||||||||||||| |||||||
Sbjct: 52 tcataatgcccctaaaaatccttattgttcttgca 86
>RF00659;mir-365;AAVX01470594.1/166-258 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 53 tcataatgcccctaaaaatccttattgctcttgca 87
||||||||||||||||||||| |||| ||| ||||
Sbjct: 53 tcataatgcccctaaaaatccctatttctcatgca 87
