miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00659;mir-365;AAIY01424277.1/585-676 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 159 bits (80), Expect = 9e-39
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 14 acagcaagaaaaatgagggactttcaggggcagctgtgtttcctgactcagtcataatgc 73
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 acagcaagaaaaatgagggactttcaggggcagctgtgttttgtgactcagtcataatgc 60
Query: 74 ccctaaaaatccttattgttcttgcagt 101
||||||||||||||||||||||||||||
Sbjct: 61 ccctaaaaatccttattgttcttgcagt 88
>RF00659;mir-365;AAPE01619298.1/1229-1137 59463:Myotis lucifugus
(little brown bat)
Length = 93
Score = 139 bits (70), Expect = 9e-33
Identities = 86/90 (95%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 14 acagcaagaaaaatgagggactttcaggggcagctgtgtttcctgactc-agtcataatg 72
|||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 1 acagcaagaaaaataagggactttcaggggcagctgtgttttctgactcaagtcataatg 60
Query: 73 cccctaaaaatccttattgttcttgcagtg 102
||||||||||||||||||| ||||||||||
Sbjct: 61 cccctaaaaatccttattgctcttgcagtg 90
>RF00659;mir-365;AANG01161851.1/1480-1570 9685:Felis catus
(domestic cat)
Length = 91
Score = 135 bits (68), Expect = 1e-31
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 14 acagcaagaaaaatgagggactttcaggggcagctgtgtttcctgactcagtcataatgc 73
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 acagcaagaaaaatgagggactttcaggggcagctgtgttttctgactcagtcataatgc 60
Query: 74 ccctaaaaatcc 85
||||||||||||
Sbjct: 61 ccctaaaaatcc 72
>RF00659;mir-365;BAAE01286148.1/272-364 8090:Oryzias latipes
(Japanese medaka)
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 15 cagcaagaaaaatgagggactttcaggggcagctgtgtttcctga-ctcagtcataatgc 73
||||||||||||||||||||||| |||||||||||||||| | | | ||||||||||||
Sbjct: 2 cagcaagaaaaatgagggacttttaggggcagctgtgttttattaacccagtcataatgc 61
Query: 74 ccctaaaaatccttattgttcttgca 99
|||||||||||||||||| |||||||
Sbjct: 62 ccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;AADN02023913.1/98870-98778 9031:Gallus gallus
(chicken)
Length = 93
Score = 79.8 bits (40), Expect = 7e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 23 aaaatgagggactttcaggggcagctgtgtttcc-tgactcagtcataatgcccctaaaa 81
||||||||||||||| ||||||| ||||||||| | || | |||||||||||||||||
Sbjct: 10 aaaatgagggacttttgggggcagatgtgtttccattacactatcataatgcccctaaaa 69
Query: 82 atccttattgttcttgcagt 101
|||||||||| |||||||||
Sbjct: 70 atccttattgctcttgcagt 89
>RF00659;mir-365;CU138533.13/80864-80956 7955:Danio rerio
(zebrafish)
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 65 tcataatgcccctaaaaatccttattgttcttgca 99
||||||||||||||||||||||||||| |||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;AAVX01470594.1/166-258 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 agtcataatgcccctaaaaatccttatt 90
||||||||||||||||||||||| ||||
Sbjct: 51 agtcataatgcccctaaaaatccctatt 78
