miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRO01197049.1/10447-10525 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 79
Score = 117 bits (59), Expect = 2e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 1 ggtacttgaagggagatcgactgtgttatattcgcagtactgacttcgaataatacatgg 60
Query: 61 ttgatcttttctcagtatc 79
|||||||||||||||||||
Sbjct: 61 ttgatcttttctcagtatc 79
>RF00641;mir-154;AAGU02626700.1/453-531 9785:Loxodonta africana
(African savanna elephant)
Length = 79
Score = 109 bits (55), Expect = 5e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1 ggtacctgaagggagatcgaccgtgttatattcgctttcttcacttcgaataatacatgg 60
Query: 61 ttgatcttttctcagtatc 79
||||||||| |||||||||
Sbjct: 61 ttgatctttcctcagtatc 79
>RF00641;mir-154;ABRQ01054379.1/186-263 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 101 bits (51), Expect = 1e-21
Identities = 73/79 (92%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1 ggtacgtgaagagagatcgaccgtgttatattcgctttcttgact-cgaataatacatgg 59
Query: 61 ttgatcttttctcagtatc 79
|||||||||||||||||||
Sbjct: 60 ttgatcttttctcagtatc 78
>RF00641;mir-154;AAGW01274484.1/168-246 9986:Oryctolagus cuniculus
(rabbit)
Length = 79
Score = 93.7 bits (47), Expect = 3e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct: 1 ggtacctgaagggagatcgaccgtgttccattcgctccgctgacttcgaataatagatgg 60
Query: 61 ttgatcttttctcagtatc 79
||||||||| ||| |||||
Sbjct: 61 ttgatctttcctcggtatc 79
