miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00840;mir-374;AJ421479.1/16189-16259 10090:Mus musculus (house
mouse)
Length = 71
Score = 141 bits (71), Expect = 2e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 12 actcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatca 60
Query: 72 ttgtccgaggt 82
|||||||||||
Sbjct: 61 ttgtccgaggt 71
Score = 60.0 bits (30), Expect = 5e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
|||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 58 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 13
>RF00840;mir-374;AAGU02466059.1/2740-2670 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 91.7 bits (46), Expect = 2e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 13 ctcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatcat 72
||||| || ||||||||||||||||||||||| |||||||||| |||| |||||||||||
Sbjct: 2 ctcggatgaatataatacaacctgctaagtgtcctagcacttatcaggctgtattatcat 61
Query: 73 tgtccg 78
||||||
Sbjct: 62 tgtccg 67
>RF00840;mir-374;AALT01656114.1/3449-3379 42254:Sorex araneus
(European shrew)
Length = 71
Score = 83.8 bits (42), Expect = 4e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 ctcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatcat 72
||||| |||||||||||||||||||||||||| ||| |||||| ||||||||||||| ||
Sbjct: 2 ctcggatggatataatacaacctgctaagtgtactaccacttaccaggttgtattattat 61
Query: 73 tgtccg 78
|||||
Sbjct: 62 cgtccg 67
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 58 ataatacaacctggtaagtggtagtacacttagcaggttgtattat 13
>RF00840;mir-374;AAPE01385052.1/350-280 59463:Myotis lucifugus
(little brown bat)
Length = 71
Score = 60.0 bits (30), Expect = 5e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 22 atataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgt 75
||||||||||||||| |||||| | |||||||| ||||||||| |||||||||
Sbjct: 11 atataatacaacctggtaagtggcccagcacttaccaggttgtactatcattgt 64
>RF00840;mir-374;AAGW01240856.1/838-768 9986:Oryctolagus cuniculus
(rabbit)
Length = 71
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgtc 76
|||||||||||||| |||||||| |||||||| ||| ||||||| | ||||||
Sbjct: 12 tataatacaacctgataagtgttacagcacttaccagattgtattgtaattgtc 65
>RF00840;mir-374;AAGV020234407.1/12295-12225 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 71
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 19 tggatataatacaacctgctaagtgttctagca 51
|||||||||||||||||| ||||||| ||||||
Sbjct: 8 tggatataatacaacctgttaagtgtcctagca 40
>RF00840;mir-374;AANN01604271.1/62-133 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 26 aatacaacctgctaagtgttctagcactta 55
|||||| |||||||||||||| ||||||||
Sbjct: 15 aatacagcctgctaagtgttccagcactta 44
