miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00840;mir-374;AJ421479.1/16189-16259 10090:Mus musculus (house
mouse)
Length = 71
Score = 97.6 bits (49), Expect = 1e-20
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 1 gataatacaacctgctaagtgctagaacacttagcaggttgtattatat 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gataatacaacctgctaagtgctagaacacttagcaggttgtattatat 11
Score = 60.0 bits (30), Expect = 2e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 2 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 47
|||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 13 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 58
>RF00840;mir-374;AAGU02466059.1/2740-2670 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 73.8 bits (37), Expect = 1e-13
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 1 gataatacaacctgctaagtgctagaacacttagcaggttgtattatat 49
||||||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct: 59 gataatacagcctgataagtgctaggacacttagcaggttgtattatat 11
>RF00840;mir-374;AALT01656114.1/3449-3379 42254:Sorex araneus
(European shrew)
Length = 71
Score = 71.9 bits (36), Expect = 6e-13
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 2 ataatacaacctgctaagtgctagaacacttagcaggttgtattatat 49
||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 58 ataatacaacctggtaagtggtagtacacttagcaggttgtattatat 11
Score = 44.1 bits (22), Expect = 1e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 2 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 47
|||||||||||||||||||| | |||||| |||||||||||||
Sbjct: 13 ataatacaacctgctaagtgtactaccacttaccaggttgtattat 58
>RF00840;mir-374;AAPE01385052.1/350-280 59463:Myotis lucifugus
(little brown bat)
Length = 71
Score = 50.1 bits (25), Expect = 2e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1 gataatacaacctgctaagtgctagaacacttagcaggttgtattatat 49
|||| ||||||||| |||||||| | |||||| |||||||||||||||
Sbjct: 59 gatagtacaacctggtaagtgctgggccacttaccaggttgtattatat 11
>RF00840;mir-374;AAGW01240856.1/838-768 9986:Oryctolagus cuniculus
(rabbit)
Length = 71
Score = 50.1 bits (25), Expect = 2e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 4 aatacaacctgctaagtgctagaacacttagcaggttgtattata 48
||||||| ||| |||||||| |||||||| ||||||||||||||
Sbjct: 56 aatacaatctggtaagtgctgtaacacttatcaggttgtattata 12
>RF00840;mir-374;AAGV020234407.1/12295-12225 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 71
Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 20 tgctagaacacttagcaggttgtattatat 49
|||||| ||||||| |||||||||||||||
Sbjct: 40 tgctaggacacttaacaggttgtattatat 11
>RF00840;mir-374;AANN01604271.1/62-133 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 16 taagtgctagaacacttagcaggttgtatt 45
|||||||| |||||||||||||| ||||||
Sbjct: 44 taagtgctggaacacttagcaggctgtatt 15
