miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32889_rno-mir-376a:mirbase
Length = 82
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 67
Query: 61 acgttttc 68
||||||||
Sbjct: 68 acgttttc 75
>33097_rno-mir-3595:mirbase
Length = 120
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 36
Query: 61 acgttttc 68
||||||||
Sbjct: 35 acgttttc 28
>27156_eca-mir-376a:mirbase
Length = 68
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacaatatttatgattaatcatagaggaaaatcc 60
Query: 61 acgttttc 68
||||||||
Sbjct: 61 acgttttc 68
>27879_mml-mir-376a-1:mirbase
Length = 68
Score = 103 bits (52), Expect = 1e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
Query: 61 acgttttc 68
||||||||
Sbjct: 61 acgttttc 68
>28617_hsa-mir-376a-1:mirbase
Length = 68
Score = 103 bits (52), Expect = 1e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
Query: 61 acgttttc 68
||||||||
Sbjct: 61 acgttttc 68
>30980_ppy-mir-376a-1:mirbase
Length = 68
Score = 103 bits (52), Expect = 1e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
Query: 61 acgttttc 68
||||||||
Sbjct: 61 acgttttc 68
>30353_ptr-mir-376a-1:mirbase
Length = 67
Score = 101 bits (51), Expect = 6e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 2 aaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcca 61
||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||
Sbjct: 1 aaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcca 60
Query: 62 cgttttc 68
|||||||
Sbjct: 61 cgttttc 67
>33348_bta-mir-376a:mirbase
Length = 99
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||| | || ||||| |||||||||||||
Sbjct: 18 taaaaggtagattctccttctatgagtacattatttacgattaatcatagaggaaaatcc 77
Query: 61 acgttttc 68
||||||||
Sbjct: 78 acgttttc 85
>33817_oar-mir-376a:mirbase
Length = 103
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||| | || ||||| |||||||||||||
Sbjct: 16 taaaaggtagattctccttctatgagtacattatttacgattaatcatagaggaaaatcc 75
Query: 61 acgttttc 68
||||||||
Sbjct: 76 acgttttc 83
>33818_oar-mir-376a:mirbase
Length = 103
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||| | || ||||| |||||||||||||
Sbjct: 16 taaaaggtagattctccttctatgagtacattatttacgattaatcatagaggaaaatcc 75
Query: 61 acgttttc 68
||||||||
Sbjct: 76 acgttttc 83
>34079_ssc-mir-376a:mirbase
Length = 80
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||| || | ||||| |||||||||||||
Sbjct: 7 taaaaggtagattctccttctatgagtacattatttattattaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
||||||||
Sbjct: 67 acgttttc 74
>26823_cfa-mir-376a-1:mirbase
Length = 58
Score = 83.8 bits (42), Expect = 1e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 7 gtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatccacgt 64
|||||||||||||||||||||||| |||| |||| ||||| |||||||||||||||||
Sbjct: 1 gtagattctccttctatgagtacattatttatgattaatcatagaggaaaatccacgt 58
>27880_mml-mir-376a-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
||||||||||||| |||||||||| ||| || ||| ||||| |||||||||||||
Sbjct: 7 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
||||||||
Sbjct: 67 acgttttc 74
>28618_hsa-mir-376a-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
||||||||||||| |||||||||| ||| || ||| ||||| |||||||||||||
Sbjct: 7 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
||||||||
Sbjct: 67 acgttttc 74
>30354_ptr-mir-376a-2:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 8e-07
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
||||||||||||| |||||||||| ||| || ||| ||||| |||||||||||||
Sbjct: 6 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcc 65
Query: 61 acgttttc 68
||||||||
Sbjct: 66 acgttttc 73
>30981_ppy-mir-376a-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
||||||||||||| |||||||||| ||| || ||| ||||| |||||||||||||
Sbjct: 7 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
||||||||
Sbjct: 67 acgttttc 74
>33351_bta-mir-376d:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 8e-07
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
||||||||||||| ||||||||||| ||| || ||| ||||| |||||||||||||
Sbjct: 7 taaaaggtagattttccttctatgattacgggtttggtgattaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
|| |||||
Sbjct: 67 acattttc 74
>33823_oar-mir-376d:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatg 24
||||||||||||| ||||||||||
Sbjct: 23 taaaaggtagattttccttctatg 46
>26824_cfa-mir-376a-2:mirbase
Length = 58
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgt 64
||||| |||||||||||||||||
Sbjct: 36 taatcatagaggaaaatccacgt 58
>26825_cfa-mir-376a-3:mirbase
Length = 59
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgt 64
||||| |||||||||||||||||
Sbjct: 37 taatcatagaggaaaatccacgt 59
>26826_cfa-mir-376b:mirbase
Length = 99
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||| ||||||
Sbjct: 59 taatcatagaggaaaatccatgttttc 85
>27157_eca-mir-376b:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||| ||||||
Sbjct: 49 taatcatagaggaaaatccatgttttc 75
>27881_mml-mir-376b:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||| ||||||
Sbjct: 60 taatcatagaggaaaatccatgttttc 86
>28619_hsa-mir-376b:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||| ||||||
Sbjct: 60 taatcatagaggaaaatccatgttttc 86
>30355_ptr-mir-376b:mirbase
Length = 99
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||| ||||||
Sbjct: 59 taatcatagaggaaaatccatgttttc 85
>30982_ppy-mir-376b:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||| ||||||
Sbjct: 60 taatcatagaggaaaatccatgttttc 86
>33349_bta-mir-376b:mirbase
Length = 93
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||| ||||||
Sbjct: 54 taatcatagaggaaaatccatgttttc 80
>33819_oar-mir-376b:mirbase
Length = 106
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||| ||||||
Sbjct: 59 taatcatagaggaaaatccatgttttc 85
>33820_oar-mir-376b:mirbase
Length = 106
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||| ||||||
Sbjct: 59 taatcatagaggaaaatccatgttttc 85
