miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||
Sbjct: 7 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
||||||||
Sbjct: 67 acgttttc 74
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||||||||||
Sbjct: 49 taatcatagaggaaaatccacgttttc 75
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||||||||||
Sbjct: 48 taatcatagaggaaaatccacgttttc 74
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgttttc 68
||||| |||||||||||||||||||||
Sbjct: 47 taatcatagaggaaaatccacgttttc 73
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 taatcgtagaggaaaatccacgtttt 67
||||| ||||||||||||||||||||
Sbjct: 48 taatcatagaggaaaatccacgtttt 73
