miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGU02626699.1/1300-1379 9785:Loxodonta africana
(African savanna elephant)
Length = 80
Score = 127 bits (64), Expect = 2e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 tgagcagaggttgcccttggtgaattcgctttattgatgttgaatcacacaaaggcaact 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7 tgagcagaggttgcccttggtgaattcgctttatttatgttgaatcacacaaaggcaact 66
Query: 61 tttgtttg 68
||||||||
Sbjct: 67 tttgtttg 74
>RF00641;mir-154;AAIY01409313.1/249-170 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 tgagcagaggttgcccttggtgaattcgctttattgatgttgaatcacacaaaggcaact 60
||||||| |||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 7 tgagcaggggttgctcttggtgaattcgctttattcttgttgaatcacacaaaggtaact 66
Query: 61 tttgtttg 68
|| |||||
Sbjct: 67 ttggtttg 74
>RF00641;mir-154;ABRQ01054378.1/68-143 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 60.0 bits (30), Expect = 4e-09
Identities = 58/67 (86%), Gaps = 4/67 (5%)
Strand = Plus / Plus
Query: 2 gagcagaggttgcccttggtgaattcgctttattgatgttgaatcacacaaaggcaactt 61
||||||| | ||| |||||||||||| |||||| ||||||||||||||||||| |||
Sbjct: 8 gagcagaagctgctcttggtgaattcactttat----gttgaatcacacaaaggcagctt 63
Query: 62 ttgtttg 68
|||||||
Sbjct: 64 ttgtttg 70
