miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054373.1/1454-1532 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 tacttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggca 60
||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 3 tacttaaagtgaggttgccctttgtatattcggttttttgacatagaatatacaagggca 62
Query: 61 agctctctgtgagta 75
||||||||| |||||
Sbjct: 63 agctctctgggagta 77
>RF00641;mir-154;ABRO01197048.1/1145-1223 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 79
Score = 109 bits (55), Expect = 5e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 1 tacttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggca 60
||||||||||||||||||||||||||||||||| || || |||| | |||||||||||||
Sbjct: 3 tacttaaagcgaggttgccctttgtatattcggcttcttcacattggatatacaagggca 62
Query: 61 agctctctgtgagta 75
|||||||||||||||
Sbjct: 63 agctctctgtgagta 77
>RF00641;mir-154;AAIY01699599.1/3364-3441 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 78
Score = 109 bits (55), Expect = 5e-24
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tacttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggca 60
||||||| ||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct: 3 tacttaacgcgaggttgcc-ttggtatattcggtttattgacgtggaatatacaagggca 61
Query: 61 agctctctgtgagta 75
|||||||||||||||
Sbjct: 62 agctctctgtgagta 76
>RF00641;mir-154;AAGV020362614.1/822-900 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 79
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaagctctc 67
||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10 agcgaggttaccctttgtgtattcggtttattgacgtggaatatacaagggcaagctctc 69
Query: 68 tgtgag 73
||||||
Sbjct: 70 tgtgag 75
>RF00641;mir-154;AAGU02275630.1/1197-1275 9785:Loxodonta africana
(African savanna elephant)
Length = 79
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 tacttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggca 60
|||||| || |||||| || ||||||||||| |||| |||||||||||||||||||||||
Sbjct: 3 tacttagagtgaggttaccatttgtatattcagtttcttgacatggaatatacaagggca 62
Query: 61 agctctctgtgag 73
|||||||||||||
Sbjct: 63 agctctctgtgag 75
>RF00641;mir-154;AAYZ01254084.1/2089-2167 9978:Ochotona princeps
(American pika)
Length = 79
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaagctctc 67
|||||||||||||| ||||||||| || ||||||| || | |||||||||||||||||||
Sbjct: 10 agcgaggttgccctgtgtatattccgtgtattgacctgcagtatacaagggcaagctctc 69
Query: 68 tgtgag 73
||||||
Sbjct: 70 tgtgag 75
>RF00641;mir-154;AADB02234051.1/94-172 9606:Homo sapiens (human)
Length = 79
Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 33 gtttattgacatggaatatacaagggcaagctctctgtgagta 75
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 35 gtttattgacgtggaatatacaagggcaagctctctgtgagta 77
