miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054364.1/4611-4690 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 159 bits (80), Expect = 7e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 2 ggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacg 60
Query: 62 gtccactaaccctcagtatc 81
||||||||||||||||||||
Sbjct: 61 gtccactaaccctcagtatc 80
>RF00641;mir-154;AAYZ01424895.1/367-448 9978:Ochotona princeps
(American pika)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 47 tgacctatgtaacatggtccactaactctcagtatc 82
>RF00641;mir-154;AAGU02503119.1/1083-1160 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
||||||||| | |||||| ||| || |||||||||||||||||||||
Sbjct: 31 acgctttatttatgacgtttgtgacctggtccactaaccctcagtatc 78
>RF00641;mir-154;ABRQ01054366.1/427-503 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
||||||||| | |||||| ||| || |||||||||||||||||||||
Sbjct: 30 acgctttatttatgacgtttgtgacctggtccactaaccctcagtatc 77
>RF00641;mir-154;ABRQ01054364.1/3334-3416 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 48 tgacctatgtaacatggtccactaactctcagtatc 83
