miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32063_mmu-mir-412:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gggtatgggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtatgggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctgg 60
Query: 61 tccactagccgtcggtgccc 80
||||||||||||||||||||
Sbjct: 61 tccactagccgtcggtgccc 80
>32906_rno-mir-412:mirbase
Length = 70
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 7 gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 60
Query: 67 agccgtcggt 76
||||||||||
Sbjct: 61 agccgtcggt 70
>27895_mml-mir-412:mirbase
Length = 91
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 7 gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 70
Query: 67 agccgtc 73
|||||||
Sbjct: 71 agccgtc 77
>28642_hsa-mir-412:mirbase
Length = 91
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 7 gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 70
Query: 67 agccgtc 73
|||||||
Sbjct: 71 agccgtc 77
>30367_ptr-mir-412:mirbase
Length = 90
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 7 gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 69
Query: 67 agccgtc 73
|||||||
Sbjct: 70 agccgtc 76
>30996_ppy-mir-412:mirbase
Length = 91
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 7 gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 70
Query: 67 agccgtc 73
|||||||
Sbjct: 71 agccgtc 77
>27171_eca-mir-412:mirbase
Length = 80
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 12 ggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccactagccg 71
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 71
Query: 72 tc 73
||
Sbjct: 72 tc 73
>33365_bta-mir-412:mirbase
Length = 90
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 8 ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccacta 70
Query: 68 gc 69
||
Sbjct: 71 gc 72
>33844_oar-mir-412:mirbase
Length = 124
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 8 ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 40 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccacta 99
Query: 68 gc 69
||
Sbjct: 100 gc 101
>33845_oar-mir-412:mirbase
Length = 124
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 8 ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 40 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccacta 99
Query: 68 gc 69
||
Sbjct: 100 gc 101
