miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00762;mir-412;AAKN02051949.1/132908-132997 10141:Cavia
porcellus (domestic guinea pig)
Length = 90
Score = 121 bits (61), Expect = 1e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 8 ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 ggacggatggtcgaccagttggaaagtaattgtctctaatgtacttcacctggtccacta 70
Query: 68 gccgtcggtgccc 80
|||||| ||||||
Sbjct: 71 gccgtctgtgccc 83
>RF00762;mir-412;CABD01018504.1/52208-52298 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 91
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 7 gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 70
Query: 67 agccgtc 73
|||||||
Sbjct: 71 agccgtc 77
>RF00762;mir-412;ABDC01257675.1/5683-5773 30608:Microcebus murinus
(gray mouse lemur)
Length = 91
Score = 101 bits (51), Expect = 1e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 7 gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct: 11 gggacggatggtcgaccagttggaaagtaattgtccccaatgtacttcacctggtccact 70
Query: 67 agccgtc 73
|||||||
Sbjct: 71 agccgtc 77
>RF00762;mir-412;AALT01091711.1/638-727 42254:Sorex araneus
(European shrew)
Length = 90
Score = 99.6 bits (50), Expect = 5e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 12 ggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccactagccg 71
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 15 ggatggtcgaccagttggaaagtaattgtgtcgaatgtacttcacctggtccactagccg 74
Query: 72 tc 73
||
Sbjct: 75 tc 76
>RF00762;mir-412;ABRQ01054379.1/32-122 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 99.6 bits (50), Expect = 5e-21
Identities = 60/62 (96%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 12 ggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccactagccg 71
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 17 ggatggtcgaccag-tggaaagtaattgtttataatgtacttcacctggtccactagccg 75
Query: 72 tc 73
||
Sbjct: 76 tc 77
>RF00762;mir-412;AAIY01437686.1/1059-969 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 91
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 15 tggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccactagccgtcg 74
||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||| ||
Sbjct: 19 tggtcgaccagttggaaagtaattttttataatgtatttcacctggtccactagccatca 78
Query: 75 gtgccc 80
||||||
Sbjct: 79 gtgccc 84
>RF00762;mir-412;AAEX02019639.1/169950-170039 9615:Canis lupus
familiaris (dog)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 8 ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
||||||||||||||||| ||||||||||||||| | || | | ||||||||| |||||
Sbjct: 11 ggacggatggtcgacca-atggaaagtaattgttgcgaagatgcatcacctggtgcacta 69
Query: 68 gccg 71
||||
Sbjct: 70 gccg 73
>RF00762;mir-412;AANN01125401.1/69-157 9365:Erinaceus europaeus
(western European hedgehog)
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 43 ctaatgtacttcacctggtccactagccgtc 73
|||||| |||||||||| |||||||||||||
Sbjct: 45 ctaatggacttcacctgctccactagccgtc 75
