miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00762;mir-412;AAKN02051949.1/132908-132997 10141:Cavia
          porcellus (domestic guinea pig)
          Length = 90

 Score =  121 bits (61), Expect = 1e-27
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                      
Query: 8  ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
          |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 ggacggatggtcgaccagttggaaagtaattgtctctaatgtacttcacctggtccacta 70

                       
Query: 68 gccgtcggtgccc 80
          |||||| ||||||
Sbjct: 71 gccgtctgtgccc 83




>RF00762;mir-412;CABD01018504.1/52208-52298 9595:Gorilla gorilla
          gorilla (Western lowland gorilla)
          Length = 91

 Score =  117 bits (59), Expect = 2e-26
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                      
Query: 7  gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
          |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 70

                 
Query: 67 agccgtc 73
          |||||||
Sbjct: 71 agccgtc 77




>RF00762;mir-412;ABDC01257675.1/5683-5773 30608:Microcebus murinus
          (gray mouse lemur)
          Length = 91

 Score =  101 bits (51), Expect = 1e-21
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                      
Query: 7  gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
          ||||||||||||||||||| ||||||||||||||  | ||||||||||||||||||||||
Sbjct: 11 gggacggatggtcgaccagttggaaagtaattgtccccaatgtacttcacctggtccact 70

                 
Query: 67 agccgtc 73
          |||||||
Sbjct: 71 agccgtc 77




>RF00762;mir-412;AALT01091711.1/638-727 42254:Sorex araneus
          (European shrew)
          Length = 90

 Score = 99.6 bits (50), Expect = 5e-21
 Identities = 59/62 (95%)
 Strand = Plus / Plus

                                                                      
Query: 12 ggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccactagccg 71
          |||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 15 ggatggtcgaccagttggaaagtaattgtgtcgaatgtacttcacctggtccactagccg 74

            
Query: 72 tc 73
          ||
Sbjct: 75 tc 76




>RF00762;mir-412;ABRQ01054379.1/32-122 9813:Procavia capensis
          (cape rock hyrax)
          Length = 91

 Score = 99.6 bits (50), Expect = 5e-21
 Identities = 60/62 (96%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                      
Query: 12 ggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccactagccg 71
          |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 17 ggatggtcgaccag-tggaaagtaattgtttataatgtacttcacctggtccactagccg 75

            
Query: 72 tc 73
          ||
Sbjct: 76 tc 77




>RF00762;mir-412;AAIY01437686.1/1059-969 9371:Echinops telfairi
          (small Madagascar hedgehog)
          Length = 91

 Score = 83.8 bits (42), Expect = 3e-16
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                      
Query: 15 tggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccactagccgtcg 74
          ||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||| || 
Sbjct: 19 tggtcgaccagttggaaagtaattttttataatgtatttcacctggtccactagccatca 78

                
Query: 75 gtgccc 80
          ||||||
Sbjct: 79 gtgccc 84




>RF00762;mir-412;AAEX02019639.1/169950-170039 9615:Canis lupus
          familiaris (dog)
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 55/64 (85%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                      
Query: 8  ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
          |||||||||||||||||  ||||||||||||||| | ||  | | ||||||||| |||||
Sbjct: 11 ggacggatggtcgacca-atggaaagtaattgttgcgaagatgcatcacctggtgcacta 69

              
Query: 68 gccg 71
          ||||
Sbjct: 70 gccg 73




>RF00762;mir-412;AANN01125401.1/69-157 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 89

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 43 ctaatgtacttcacctggtccactagccgtc 73
          |||||| |||||||||| |||||||||||||
Sbjct: 45 ctaatggacttcacctgctccactagccgtc 75