miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>33370_bta-mir-425:mirbase
          Length = 87

 Score =  161 bits (81), Expect = 1e-40
 Identities = 84/85 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaagtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 60
          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  aaagcgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 61

                                   
Query: 61 atgtcgtgtccgcccagtgctcttt 85
          |||||||||||||||||||||||||
Sbjct: 62 atgtcgtgtccgcccagtgctcttt 86




>33371_bta-mir-425:mirbase
          Length = 87

 Score =  161 bits (81), Expect = 1e-40
 Identities = 84/85 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaagtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 60
          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  aaagcgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 61

                                   
Query: 61 atgtcgtgtccgcccagtgctcttt 85
          |||||||||||||||||||||||||
Sbjct: 62 atgtcgtgtccgcccagtgctcttt 86




>32909_rno-mir-425:mirbase
          Length = 83

 Score =  157 bits (79), Expect = 2e-39
 Identities = 82/83 (98%)
 Strand = Plus / Plus

                                                                      
Query: 3  agtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaat 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaat 60

                                 
Query: 63 gtcgtgtccgcccagtgctcttt 85
           ||||||||||||||||||||||
Sbjct: 61 atcgtgtccgcccagtgctcttt 83




>28648_hsa-mir-425:mirbase
          Length = 87

 Score =  153 bits (77), Expect = 2e-38
 Identities = 83/85 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaagtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 60
          |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2  aaagcgctttggaatgacacgatcactcccgttgagtgggcacccgagaagccatcggga 61

                                   
Query: 61 atgtcgtgtccgcccagtgctcttt 85
          |||||||||||||||||||||||||
Sbjct: 62 atgtcgtgtccgcccagtgctcttt 86




>30372_ptr-mir-425:mirbase
          Length = 86

 Score =  153 bits (77), Expect = 2e-38
 Identities = 83/85 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaagtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 60
          |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2  aaagcgctttggaatgacacgatcactcccgttgagtgggcacccgagaagccatcggga 61

                                   
Query: 61 atgtcgtgtccgcccagtgctcttt 85
          |||||||||||||||||||||||||
Sbjct: 62 atgtcgtgtccgcccagtgctcttt 86




>31002_ppy-mir-425:mirbase
          Length = 87

 Score =  153 bits (77), Expect = 2e-38
 Identities = 83/85 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaagtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 60
          |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2  aaagcgctttggaatgacacgatcactcccgttgagtgggcacccgagaagccatcggga 61

                                   
Query: 61 atgtcgtgtccgcccagtgctcttt 85
          |||||||||||||||||||||||||
Sbjct: 62 atgtcgtgtccgcccagtgctcttt 86




>34092_ssc-mir-425:mirbase
          Length = 80

 Score =  151 bits (76), Expect = 9e-38
 Identities = 79/80 (98%)
 Strand = Plus / Plus

                                                                      
Query: 2  aagtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaa 61
          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1  aagtgctttggaatgacacgatcactcccgttgagtgggcacccaagtagccatcgggaa 60

                              
Query: 62 tgtcgtgtccgcccagtgct 81
          ||||||||||||||||||||
Sbjct: 61 tgtcgtgtccgcccagtgct 80




>34093_ssc-mir-425:mirbase
          Length = 80

 Score =  151 bits (76), Expect = 9e-38
 Identities = 79/80 (98%)
 Strand = Plus / Plus

                                                                      
Query: 2  aagtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaa 61
          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1  aagtgctttggaatgacacgatcactcccgttgagtgggcacccaagtagccatcgggaa 60

                              
Query: 62 tgtcgtgtccgcccagtgct 81
          ||||||||||||||||||||
Sbjct: 61 tgtcgtgtccgcccagtgct 80




>27901_mml-mir-425:mirbase
          Length = 87

 Score =  145 bits (73), Expect = 6e-36
 Identities = 82/85 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaagtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 60
          |||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 2  aaagcgctttggaatgacacgatcactcccgttgagtgggcccccgagaagccatcggga 61

                                   
Query: 61 atgtcgtgtccgcccagtgctcttt 85
          |||||||||||||||||||||||||
Sbjct: 62 atgtcgtgtccgcccagtgctcttt 86




>26842_cfa-mir-425:mirbase
          Length = 63

 Score =  125 bits (63), Expect = 5e-30
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 13 aatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaatgtcgtgtccg 72
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaatgtcgtgtccg 60

             
Query: 73 ccc 75
          |||
Sbjct: 61 ccc 63




>27449_mdo-mir-425:mirbase
          Length = 85

 Score =  121 bits (61), Expect = 8e-29
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaagtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 60
          |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 1  aaagtgctttggaatgacacgatcactcccgttgagcggacagccaagaagccatcggga 60

                                   
Query: 61 atgtcgtgtccgcccagtgctcttt 85
          || ||||||||| ||| ||||||||
Sbjct: 61 atatcgtgtccgtccaatgctcttt 85




>31551_oan-mir-425:mirbase
          Length = 103

 Score =  103 bits (52), Expect = 2e-23
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                      
Query: 6  gctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaatgtc 65
          ||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||
Sbjct: 13 gctttggaatgacacgatcactcccgttgagcggacagccaagaagccatcgggaatatc 72

                              
Query: 66 gtgtccgcccagtgctcttt 85
          ||||||| |||  |||||||
Sbjct: 73 gtgtccgtccaaagctcttt 92




>26530_tgu-mir-425:mirbase
          Length = 89

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                      
Query: 6  gctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaatgtc 65
          |||||||||||||||||||||||||| ||||   ||| |||   |||||||||| |||||
Sbjct: 9  gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 68

               
Query: 66 gtgtc 70
          |||||
Sbjct: 69 gtgtc 73




>26531_tgu-mir-425:mirbase
          Length = 89

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                      
Query: 6  gctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaatgtc 65
          |||||||||||||||||||||||||| ||||   ||| |||   |||||||||| |||||
Sbjct: 9  gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 68

               
Query: 66 gtgtc 70
          |||||
Sbjct: 69 gtgtc 73




>25855_xtr-mir-425:mirbase
          Length = 77

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 9  ttggaatgacacgatcactcccgttgag 36
          ||||||||||||||||||||||||||||
Sbjct: 4  ttggaatgacacgatcactcccgttgag 31