miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00803;mir-425;ABRQ01082424.1/2274-2358 9813:Procavia capensis
          (cape rock hyrax)
          Length = 85

 Score =  153 bits (77), Expect = 4e-37
 Identities = 83/85 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaagtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 60
          |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1  aaagcgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatctgga 60

                                   
Query: 61 atgtcgtgtccgcccagtgctcttt 85
          |||||||||||||||||||||||||
Sbjct: 61 atgtcgtgtccgcccagtgctcttt 85




>RF00803;mir-425;ABQO010558253.1/28-112 9315:Macropus eugenii
          (tammar wallaby)
          Length = 85

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaagtgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 60
          |||| ||||||||||||||||||||||||||||||| || || |||||||||||||||| 
Sbjct: 1  aaagcgctttggaatgacacgatcactcccgttgagcggacagccaagaagccatcgggc 60

                    
Query: 61 atgtcgtgtc 70
          || |||||||
Sbjct: 61 atatcgtgtc 70




>RF00803;mir-425;ABQF01037869.1/779-863 59729:Taeniopygia guttata
          Length = 85

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                      
Query: 6  gctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaatgtc 65
          |||||||||||||||||||||||||| ||||   ||| |||   |||||||||| |||||
Sbjct: 6  gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 65

               
Query: 66 gtgtc 70
          |||||
Sbjct: 66 gtgtc 70




>RF00803;mir-425;AAWZ01017461.1/6392-6309 28377:Anolis
          carolinensis (green anole)
          Length = 84

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 8  tttggaatgacacgatcactcccgttgag 36
          |||||||||||||||||||||||| ||||
Sbjct: 8  tttggaatgacacgatcactcccgctgag 36




>RF00803;mir-425;AANN01668557.1/686-771 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 10 tggaatgacacgatcactcccgttgagtgggc 41
          |||||||||||||||||||||| |||| ||||
Sbjct: 10 tggaatgacacgatcactcccgctgagcgggc 41




>RF00803;mir-425;AAVX01021859.1/1356-1438 7868:Callorhinchus milii
          (ghost shark)
          Length = 83

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 tggaatgacacgatcactcccg 31
          ||||||||||||||||||||||
Sbjct: 10 tggaatgacacgatcactcccg 31