miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7M732|RTL1_MOUSE Retrotransposon-like protein 1 OS=Mus musculus
           GN=Rtl1 PE=2 SV=1
          Length = 1744

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -3

Query: 73  LPTDLLQEVEEPSSGPHQEMQELP 2
           LPTDLLQEVEEPSSGPHQEMQELP
Sbjct: 126 LPTDLLQEVEEPSSGPHQEMQELP 149



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = -3

Query: 73  LPTDLLQEVEEPSSGPHQEMQELP 2
           LPT+LLQEVEEPSSGPHQEMQELP
Sbjct: 104 LPTNLLQEVEEPSSGPHQEMQELP 127



 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = -3

Query: 73  LPTDLLQEVEEPSSGPHQEMQELP 2
           LPTDLL+EVEEPSSGP+QEMQELP
Sbjct: 148 LPTDLLREVEEPSSGPYQEMQELP 171



 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = -3

Query: 73  LPTDLLQEVEEPSSGPHQEMQELP 2
           LPTDLL+EVEEPSSGP+QEMQELP
Sbjct: 170 LPTDLLREVEEPSSGPYQEMQELP 193



 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = -3

Query: 73  LPTDLLQEVEEPSSGPHQEMQELP 2
           LPTDLL+EVEEPSSGP+QEMQELP
Sbjct: 192 LPTDLLREVEEPSSGPYQEMQELP 215



 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = -3

Query: 73  LPTDLLQEVEEPSSGPHQEMQELP 2
           LPTDLL+EVEEPSSGP+QEMQELP
Sbjct: 214 LPTDLLREVEEPSSGPYQEMQELP 237