miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00775;mir-432;EU434918.1/822-729 10090:Mus musculus (house
mouse)
Length = 94
Score = 105 bits (53), Expect = 8e-23
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 1 tgggtagctcttgcatttcctggtgggggccactggatggctcctccacttcttggagta 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 30 tgggtagctcttgcatttcctggtaggggccactggatggctcctccacttcccggagta 89
Query: 61 gatca 65
|||||
Sbjct: 90 gatca 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 38 tggctcctccacttcttggagtagatcagtgggcagct 75
||||||||||||||| |||||||||||||||| ||||
Sbjct: 1 tggctcctccacttcccggagtagatcagtgggtagct 38
>RF00775;mir-432;ABRQ01643018.1/1316-1409 9813:Procavia capensis
(cape rock hyrax)
Length = 94
Score = 69.9 bits (35), Expect = 4e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 15 atttcctggtgggggccactggatggctcctccacttcttggagtagatca 65
|||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct: 44 atttcctgatgtgggccactggatggctcctccatgtcttggagtagatca 94
>RF00775;mir-432;AAHY01103463.1/29459-29375 10090:Mus musculus
(house mouse)
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 33 ctggatggctcctccacttcttggagtagatca 65
|||||||||||||||||||| |||||||||||
Sbjct: 53 ctggatggctcctccacttcccggagtagatca 85
>RF00775;mir-432;AABR04099008.1/425-337 10116:Rattus norvegicus
(Norway rat)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1 tgggtagctcttgcatttcctggtgggggccactggatggctcc 44
|||| |||||||||||||||| | | |||||||||| |||||||
Sbjct: 25 tgggcagctcttgcatttcctcgagtgggccactgggtggctcc 68
>RF00775;mir-432;AANN01125399.1/1129-1222 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 gggccactggatggctcctcca 48
||||||||||||||||||||||
Sbjct: 56 gggccactggatggctcctcca 77
