miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00775;mir-432;EU434918.1/822-729 10090:Mus musculus (house
          mouse)
          Length = 94

 Score =  105 bits (53), Expect = 8e-23
 Identities = 62/65 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgggtagctcttgcatttcctggtgggggccactggatggctcctccacttcttggagta 60
          |||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||
Sbjct: 30 tgggtagctcttgcatttcctggtaggggccactggatggctcctccacttcccggagta 89

               
Query: 61 gatca 65
          |||||
Sbjct: 90 gatca 94



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 38 tggctcctccacttcttggagtagatcagtgggcagct 75
          |||||||||||||||  |||||||||||||||| ||||
Sbjct: 1  tggctcctccacttcccggagtagatcagtgggtagct 38




>RF00775;mir-432;ABRQ01643018.1/1316-1409 9813:Procavia capensis
          (cape rock hyrax)
          Length = 94

 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                             
Query: 15 atttcctggtgggggccactggatggctcctccacttcttggagtagatca 65
          |||||||| || ||||||||||||||||||||||  |||||||||||||||
Sbjct: 44 atttcctgatgtgggccactggatggctcctccatgtcttggagtagatca 94




>RF00775;mir-432;AAHY01103463.1/29459-29375 10090:Mus musculus
          (house mouse)
          Length = 85

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 33 ctggatggctcctccacttcttggagtagatca 65
          ||||||||||||||||||||  |||||||||||
Sbjct: 53 ctggatggctcctccacttcccggagtagatca 85




>RF00775;mir-432;AABR04099008.1/425-337 10116:Rattus norvegicus
          (Norway rat)
          Length = 89

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                      
Query: 1  tgggtagctcttgcatttcctggtgggggccactggatggctcc 44
          |||| |||||||||||||||| | | |||||||||| |||||||
Sbjct: 25 tgggcagctcttgcatttcctcgagtgggccactgggtggctcc 68




>RF00775;mir-432;AANN01125399.1/1129-1222 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 94

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 27 gggccactggatggctcctcca 48
          ||||||||||||||||||||||
Sbjct: 56 gggccactggatggctcctcca 77