miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00723;mir-448;AAPE01293616.1/2463-2573 59463:Myotis lucifugus
(little brown bat)
Length = 111
Score = 165 bits (83), Expect = 2e-40
Identities = 102/107 (95%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctattt-atactaagagtgggc 63
Query: 65 tggctggttgcatatgtaggatgtcccatctcctggcccacttcgtc 111
||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 64 tggctggttgcatatgtaggatgtcccatctccctgcccacttcgtc 110
>RF00723;mir-448;ABRO01488018.1/1178-1067 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 112
Score = 155 bits (78), Expect = 1e-37
Identities = 96/102 (94%)
Strand = Plus / Plus
Query: 4 aggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagaggggg 63
|||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |
Sbjct: 4 aggaggttgaacatcctgcatagtgctgccaggaaaaccctattccatactaagagggag 63
Query: 64 ctggctggttgcatatgtaggatgtcccatctcctggcccac 105
||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 64 ctggctgtttgcatatgtaggatgtcccatctcctggtccac 105
>RF00723;mir-448;AAKN02039763.1/15790-15679 10141:Cavia porcellus
(domestic guinea pig)
Length = 112
Score = 155 bits (78), Expect = 1e-37
Identities = 99/106 (93%)
Strand = Plus / Plus
Query: 3 gaggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggg 62
|||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||
Sbjct: 3 gaggaggttgaacatcctgcatggtgctgccacgaaatccctttgtcatactaagagggg 62
Query: 63 gctggctggttgcatatgtaggatgtcccatctcctggcccacttc 108
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 63 actggctggttgcacatgtaggatgtcccatctcctggcccacttc 108
>RF00723;mir-448;ABRQ01383699.1/6043-6154 9813:Procavia capensis
(cape rock hyrax)
Length = 112
Score = 151 bits (76), Expect = 2e-36
Identities = 97/104 (93%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||||||||||||||||||||||||||||||||| ||||| ||| || |||||||||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaacccctatttcgtaataagagggggc 64
Query: 65 tggctggttgcatatgtaggatgtcccatctcctggcccacttc 108
|||||||||||||||||||||||||||||||| |||||||||
Sbjct: 65 aggctggttgcatatgtaggatgtcccatctccctgcccacttc 108
>RF00723;mir-448;AALT01302712.1/526-635 42254:Sorex araneus
(European shrew)
Length = 110
Score = 103 bits (52), Expect = 5e-22
Identities = 94/107 (87%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||||||||||||||||||||||||||||||||| || | | ||| ||| |||| |
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaaatcc--cgttatagtaaaagggcac 62
Query: 65 tggctggttgcatatgtaggatgtcccatctcctggcccacttcgtc 111
|| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 63 tgactggttgcatatgtaggatgtcccatctccctgcccacttcgtc 109
>RF00723;mir-448;ABVD01951229.1/707-778 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 72
Score = 63.9 bits (32), Expect = 4e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 16 atcctgcatagtgctgccaggaaatccctacttcatactaagagggggctggct-ggttg 74
|||||||||| ||||||||||||| ||||| | ||| ||||| |||||||||| |||||
Sbjct: 1 atcctgcataatgctgccaggaaacccctattatatagtaagatggggctggctgggttg 60
Query: 75 catatgtaggat 86
||||| ||||||
Sbjct: 61 catatataggat 72
>RF00723;mir-448;ABRN01082043.1/467-578 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 112
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||| ||||||||||||||||| | ||||||||||||| || |||||||||||||||
Sbjct: 5 ggaggctgaacatcctgcatagtaatcacaggaaatccctattttatactaagagggggc 64
