miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;CAAA01026551.1/5526-5613 10090:Mus musculus
(house mouse)
Length = 88
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 agactcgggtaggcagtgttgttagctggctgcgttgggtcaggccagcagccacagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 agactcgggtaggcagtgttgttagctggctgcgttgggtcaggccagcagccacagcta 65
Query: 61 ccctgccacttccttctggc 80
||||||||||||||||||||
Sbjct: 66 ccctgccacttccttctggc 85
>RF00711;mir-449;AABR04048554.1/12526-12437 10116:Rattus
norvegicus (Norway rat)
Length = 90
Score = 91.7 bits (46), Expect = 1e-18
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 1 agactcgggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagc 58
|||||| |||||||||||| ||||||||||||||||||||| | | ||||||||||||
Sbjct: 6 agactcaggtaggcagtgtgttgttagctggctgcgttgggttaagtaagcagccacagc 65
Query: 59 taccctgccacttccttctgg 79
||||||||||||| |||||||
Sbjct: 66 taccctgccacttgcttctgg 86
>RF00711;mir-449;AALT01534765.1/2698-2787 42254:Sorex araneus
(European shrew)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/74 (89%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
|||||||||||| |||||||||||||| |||| |||| ||||||||||| ||||||||
Sbjct: 13 ggtaggcagtgtattgttagctggctgctttggatcagttcagcagccacaactaccctg 72
Query: 66 ccacttccttctgg 79
|||||| |||||||
Sbjct: 73 ccacttgcttctgg 86
>RF00711;mir-449;ABRQ01364111.1/2424-2335 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/74 (89%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
|||||||||||| |||||||||||||| ||||||||| ||||||||||| ||| ||||
Sbjct: 13 ggtaggcagtgtattgttagctggctgctttgggtcagttcagcagccacaactatcctg 72
Query: 66 ccacttccttctgg 79
|||||| |||||||
Sbjct: 73 ccacttgcttctgg 86
>RF00711;mir-449;AACZ02174908.1/1653-1741 9598:Pan troglodytes
(chimpanzee)
Length = 89
Score = 69.9 bits (35), Expect = 5e-12
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
|||||||||||| |||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 13 ggtaggcagtgtattgttagctggctgc-ttgggtcaagtcagcagccacaactaccctg 71
Query: 66 ccactt 71
||||||
Sbjct: 72 ccactt 77
>RF00711;mir-449;ABRO01253740.1/3498-3409 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 90
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 16 gtgttgttagctggctgcgttgggtcaggccagcagccacagctaccctgccacttcctt 75
|||||||||||||||||| |||| || | ||||||||||| | |||||||||||| |||
Sbjct: 23 gtgttgttagctggctgctttggaccaagtcagcagccacaacgaccctgccacttgctt 82
Query: 76 ctgg 79
||||
Sbjct: 83 ctgg 86
>RF00711;mir-449;AAGW01346249.1/4621-4532 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 63.9 bits (32), Expect = 3e-10
Identities = 65/75 (86%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
|||||||||||| |||||| ||||||| |||||||| | |||||||||||| ||| |||
Sbjct: 13 ggtaggcagtgtaatgttagttggctgctttgggtcaagtcagcagccacaggtacgctg 72
Query: 66 ccacttccttctggc 80
|||||| | ||||||
Sbjct: 73 ccacttgcctctggc 87
>RF00711;mir-449;AAGU02394433.1/7316-7227 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 61/71 (85%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
|||||||||||| |||||||||||||| |||||||| |||||||||| |||| |||
Sbjct: 13 ggtaggcagtgtattgttagctggctgctttgggtcaattcagcagccacgactacgctg 72
Query: 66 ccacttccttc 76
|||||| ||||
Sbjct: 73 ccacttgcttc 83
>RF00711;mir-449;AAQR01454395.1/190-101 30611:Otolemur garnettii
(small-eared galago)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 62/74 (83%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
|||||||||||| |||||||||||||| ||| || | | ||||||| | ||||||||
Sbjct: 13 ggtaggcagtgtattgttagctggctgctttgcatcgagtccgcagccataactaccctg 72
Query: 66 ccacttccttctgg 79
|||||| |||||||
Sbjct: 73 ccacttgcttctgg 86
