miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00708;mir-450;CAAA01222947.1/3684-3594 10090:Mus musculus
(house mouse)
Length = 91
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 gagagatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagagatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaa 60
Query: 61 cattttgcataaatagctttgtgtcaataca 91
|||||||||||||||||||||||||||||||
Sbjct: 61 cattttgcataaatagctttgtgtcaataca 91
>RF00708;mir-450;AABR04140564.1/3502-3412 10116:Rattus norvegicus
(Norway rat)
Length = 91
Score = 119 bits (60), Expect = 6e-27
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 1 gagagatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaa 60
||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 gagagatgcggagctgtttttgcgatgtgttcctaatgtgtgctacaattatattgggaa 60
Query: 61 cattttgcataaatag 76
||||||||||||||||
Sbjct: 61 cattttgcataaatag 76
>RF00708;mir-450;AANU01115741.1/25269-25359 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 99.6 bits (50), Expect = 6e-21
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 5 gatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacatt 64
|||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 5 gatactaaactgtttttgcgatgtgttcctaatatgtactataaatatattgggaacatt 64
Query: 65 ttgcat 70
||||||
Sbjct: 65 ttgcat 70
>RF00708;mir-450;AACN010723377.1/367-457 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 95.6 bits (48), Expect = 9e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaatag 76
||||||||||||||||||||||||| |||||| | ||||||||||||||||||| ||||
Sbjct: 17 tttttgcgatgtgttcctaatatgtactataagtgtattgggaacattttgcattcatag 76
Query: 77 ctttgtgtcaat 88
|||||||||||
Sbjct: 77 ttttgtgtcaat 88
>RF00708;mir-450;AAYZ01306302.1/1275-1185 9978:Ochotona princeps
(American pika)
Length = 91
Score = 89.7 bits (45), Expect = 6e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 14 ctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaa 73
||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| |
Sbjct: 14 ctgtttttgcgatatgttcctaatatgcactataactatattgggaacattttgcatgca 73
Query: 74 tagctttgtgtca 86
||| |||||||||
Sbjct: 74 tagttttgtgtca 86
>RF00708;mir-450;ABRQ01123746.1/594-504 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 85.7 bits (43), Expect = 9e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaatag 76
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||
Sbjct: 17 tttttgcgatatgttcctaatatgttatataagtatattgggaacattttgcatctatag 76
Query: 77 ctttgtgtcaataca 91
||||| ||||||||
Sbjct: 77 ttttgtatcaataca 91
>RF00708;mir-450;AACN010723377.1/501-591 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 4 agatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacat 63
|||| |||| ||||||||||||||||||||||||||| ||| | ||||||||| |||
Sbjct: 4 agatgctgaactgtttttgcgatgtgttcctaatatgcagtatgaacatattgggagcat 63
Query: 64 tttgcat 70
|||||||
Sbjct: 64 tttgcat 70
>RF00708;mir-450;AAQQ01708411.1/190-100 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 4 agatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacat 63
|||| |||| || ||||||||||||||||||||||||| || | | ||||||||||||
Sbjct: 4 agatgctgaactatttttgcgatgtgttcctaatatgtaataagaatgtattgggaacat 63
Query: 64 tttgcat 70
|||||||
Sbjct: 64 tttgcat 70
>RF00708;mir-450;BX649621.5/156260-156170 10090:Mus musculus
(house mouse)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 4 agatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattggg 58
|||| |||| || ||||||||||||||||||||||||| |||| | |||||||||
Sbjct: 4 agatgctgaactatttttgcgatgtgttcctaatatgtactatgagtatattggg 58
>RF00708;mir-450;ABRQ01123746.1/420-330 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 51/55 (92%), Gaps = 2/55 (3%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatat-gtgctataattatattgggaacattttgcat 70
|||||| |||||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 17 tttttgtgatgtgttcctaatattgtg-tataaatatattgggaacattttgcat 70
>RF00708;mir-450;AAGV020284255.1/3919-3829 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcat 70
|||||| ||||||||||||||||| ||||| | ||||||||| |||||||||
Sbjct: 17 tttttgtgatgtgttcctaatatgaaatataagtgtattgggaatattttgcat 70
>RF00708;mir-450;AAKN02053360.1/153106-153014 10141:Cavia
porcellus (domestic guinea pig)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 44 tataattatattgggaacattttgcataaatagctttgtgtcaata 89
||||| ||||||||||||||||||||| |||| ||||| ||||||
Sbjct: 46 tataagtatattgggaacattttgcatccatagttttgtatcaata 91
>RF00708;mir-450;AAYZ01306302.1/1453-1363 9978:Ochotona princeps
(American pika)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgt 41
|||||||||||||||||||||||||
Sbjct: 17 tttttgcgatgtgttcctaatatgt 41
>RF00708;mir-450;ABRO01450845.1/1386-1298 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcat 70
||||||||||||||| |||||||| || | | |||| ||||||||||| ||||
Sbjct: 16 tttttgcgatgtgttactaatatgcactttgaatatactgggaacatttcgcat 69
>RF00708;mir-450;ABRO01450845.1/1546-1456 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcat 70
|||||||||||||||| |||||||| ||| | | ||||||| |||| ||||||
Sbjct: 17 tttttgcgatgtgttcataatatgttatatgaatgtattggggacatcttgcat 70
