miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00708;mir-450;CAAA01222947.1/3522-3431 10090:Mus musculus
(house mouse)
Length = 92
Score = 163 bits (82), Expect = 4e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 gatacagaattatttttgcagtatgttcctgaatacataacataagcgtattgggaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gatacagaattatttttgcagtatgttcctgaatacataacataagcgtattgggaacat 64
Query: 61 tttgcatgcataattttgtatc 82
||||||||||||||||||||||
Sbjct: 65 tttgcatgcataattttgtatc 86
>RF00708;mir-450;AAGU02249219.1/617-526 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 69.9 bits (35), Expect = 5e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 8 aattatttttgcagtatgttcctgaatacataacataagcgtattgggaacattttgcat 67
||||||||||||| |||||||||||||| ||| ||| ||||||||| ||||||||||
Sbjct: 12 aattatttttgcaatatgttcctgaatatgtaagccaagtgtattgggagcattttgcat 71
Query: 68 gcataattttgtatc 82
|||| |||||||||
Sbjct: 72 ccatagttttgtatc 86
>RF00708;mir-450;AAKN02053360.1/153106-153014 10141:Cavia
porcellus (domestic guinea pig)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 5 cagaattatttttgcagtatgttcctga-atacataacataagcgtattgggaacatttt 63
|||||||||||||||| ||||||||||| || | | ||||| |||||||||||||||
Sbjct: 9 cagaattatttttgcaatatgttcctgatatgtaatatataagtatattgggaacatttt 68
Query: 64 gcatgcataattttgtatc 82
|||| |||| |||||||||
Sbjct: 69 gcatccatagttttgtatc 87
>RF00708;mir-450;AAYZ01306302.1/1275-1185 9978:Ochotona princeps
(American pika)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 49 tattgggaacattttgcatgcataattttgt 79
|||||||||||||||||||||||| ||||||
Sbjct: 52 tattgggaacattttgcatgcatagttttgt 82
>RF00708;mir-450;AACN010723377.1/367-457 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 42 ataagcgtattgggaacattttgcatgcataattttgt 79
||||| |||||||||||||||||||| |||| ||||||
Sbjct: 45 ataagtgtattgggaacattttgcattcatagttttgt 82
>RF00708;mir-450;AACN010723377.1/501-591 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 49 tattgggaacattttgcatgcataattttgtatc 82
|||||||| |||||||||||||| |||||||||
Sbjct: 52 tattgggagcattttgcatgcatggttttgtatc 85
>RF00708;mir-450;AANU01115741.1/25269-25359 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 49 tattgggaacattttgcatgcataattttgtatc 82
|||||||||||||||||||| || |||||||||
Sbjct: 52 tattgggaacattttgcatgtgtagttttgtatc 85
>RF00708;mir-450;ABRQ01123746.1/594-504 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 49 tattgggaacattttgcatgcataattttgtatc 82
||||||||||||||||||| ||| |||||||||
Sbjct: 52 tattgggaacattttgcatctatagttttgtatc 85
