miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00722;mir-451;AAKN02033337.1/59671-59742 10141:Cavia porcellus
(domestic guinea pig)
Length = 72
Score = 121 bits (61), Expect = 1e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 cttgggaatggcgaggaaaccgttaccattactgagtttagtaatggtaacggttctctt 60
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 cttggggatggcgaggaaaccgttaccattactgagtttagtaatggtgacggttctctt 60
Query: 61 gctgctccc 69
|||||||||
Sbjct: 61 gctgctccc 69
>RF00722;mir-451;AAPN01323131.1/127-56 9258:Ornithorhynchus
anatinus (platypus)
Length = 72
Score = 103 bits (52), Expect = 3e-22
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 9 tggcgaggaaaccgttaccattactgagtttagtaatggtaacggttctcttgctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9 tggcgaggaaaccgttaccattactgagtttagtaatggtaacggttctctggctg 64
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 18 aaccgttaccattactgagtttagtaatggtaacggtt 55
|||||||||||||||| | | ||||||||||||||||
Sbjct: 55 aaccgttaccattactaaactcagtaatggtaacggtt 18
>RF00722;mir-451;ABQO010853698.1/772-701 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 97.6 bits (49), Expect = 2e-20
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 13 gaggaaaccgttaccattactgagtttagtaatggtaacggttctcttgctgc 65
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13 gaggaaaccgttaccattactgtgtttagtaatggtaacggttctcttgctgc 65
>RF00722;mir-451;AAGU02141945.1/2025-1955 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 97.6 bits (49), Expect = 2e-20
Identities = 62/65 (95%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 cttgggaatggcgaggaaaccgttaccattactgagtttagtaatggtaacggttctctt 60
|||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 cttgggaatgacgaggaa-ccgttaccattactgagtttagtaatggtaatggttctctt 59
Query: 61 gctgc 65
|||||
Sbjct: 60 gctgc 64
>RF00722;mir-451;ABQF01026376.1/875-804 59729:Taeniopygia guttata
Length = 72
Score = 87.7 bits (44), Expect = 2e-17
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 10 ggcgaggaaaccgttaccattactgagtttagtaatggtaacggttct 57
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggcggggaaaccgttaccattactgagtttagtaatggtaacggttct 57
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 18 aaccgttaccattactgagtttagtaatggtaacggtt 55
|||||||||||||||| | | ||||||||||||||||
Sbjct: 55 aaccgttaccattactaaactcagtaatggtaacggtt 18
>RF00722;mir-451;AADN02025858.1/509-580 9031:Gallus gallus
(chicken)
Length = 72
Score = 85.7 bits (43), Expect = 7e-17
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 15 ggaaaccgttaccattactgagtttagtaatggtaacggttct 57
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 ggaaaccgttaccattactgagtttagtaatggtaacggttct 57
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 18 aaccgttaccattactgagtttagtaatggtaacggtt 55
|||||||||||||||| | | ||||||||||||||||
Sbjct: 55 aaccgttaccattactaaactcagtaatggtaacggtt 18
>RF00722;mir-451;AAFR03044825.1/5420-5349 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 72
Score = 75.8 bits (38), Expect = 6e-14
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 9 tggcgaggaaaccgttaccattactgagtttagtaatggtaacggttctc 58
||||| |||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 9 tggcggggaaaccgttaccattactgtgtttagtaatggtaagggttctc 58
>RF00722;mir-451;BX548073.8/159677-159748 7955:Danio rerio
(zebrafish)
Length = 72
Score = 75.8 bits (38), Expect = 6e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 16 gaaaccgttaccattactgagtttagtaatggtaacggttct 57
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 16 gaaaccgttaccattactgagtttagtaatggtaagggttct 57
>RF00722;mir-451;BAAF04033966.1/3754-3826 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 17 aaaccgttaccattactgagtttagtaatggtaacggttc 56
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 17 aaaccgttaccattactgagtttagtaatggtaagggttc 56
>RF00722;mir-451;CAAB01000931.1/60591-60519 31033:Takifugu
rubripes
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 17 aaaccgttaccattactgagttt-agtaatggtaacggttc 56
||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 17 aaaccgttaccattactgagtttcagttatggtaagggttc 57
>RF00722;mir-451;AANH01000562.1/126354-126425 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 17 aaaccgttaccattactgagttt-agtaatggtaacggtt 55
||||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 17 aaaccgttaccattactgagtttcagttatggtaagggtt 56
