miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32096_mmu-mir-465c-1:mirbase
          Length = 81

 Score =  101 bits (51), Expect = 7e-23
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcaatgccctatttagaatggcgctgatctgatgaatnnnnnnnnnntgatcagggcct 60
          ||||||||||||||||||||||||||||||||||||||          ||||||||||||
Sbjct: 1  tgcaatgccctatttagaatggcgctgatctgatgaataaaaaaaaaatgatcagggcct 60

                               
Query: 61 ttctaagtagagtaaggctta 81
          |||||||||||||||||||||
Sbjct: 61 ttctaagtagagtaaggctta 81




>32097_mmu-mir-465c-1:mirbase
          Length = 81

 Score =  101 bits (51), Expect = 7e-23
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcaatgccctatttagaatggcgctgatctgatgaatnnnnnnnnnntgatcagggcct 60
          ||||||||||||||||||||||||||||||||||||||          ||||||||||||
Sbjct: 1  tgcaatgccctatttagaatggcgctgatctgatgaataaaaaaaaaatgatcagggcct 60

                               
Query: 61 ttctaagtagagtaaggctta 81
          |||||||||||||||||||||
Sbjct: 61 ttctaagtagagtaaggctta 81




>32099_mmu-mir-465c-2:mirbase
          Length = 81

 Score =  101 bits (51), Expect = 7e-23
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcaatgccctatttagaatggcgctgatctgatgaatnnnnnnnnnntgatcagggcct 60
          ||||||||||||||||||||||||||||||||||||||          ||||||||||||
Sbjct: 1  tgcaatgccctatttagaatggcgctgatctgatgaataaaaaaaaaatgatcagggcct 60

                               
Query: 61 ttctaagtagagtaaggctta 81
          |||||||||||||||||||||
Sbjct: 61 ttctaagtagagtaaggctta 81




>32092_mmu-mir-465b-1:mirbase
          Length = 79

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 69/81 (85%), Gaps = 2/81 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcaatgccctatttagaatggcgctgatctgatgaatnnnnnnnnnntgatcagggcct 60
          |||||||||||||||||||||| ||||||||||||||           ||||||||||||
Sbjct: 1  tgcaatgccctatttagaatggtgctgatctgatgaa--ataaaaaattgatcagggcct 58

                               
Query: 61 ttctaagtagagtaaggctta 81
          |||||||||||||||||||||
Sbjct: 59 ttctaagtagagtaaggctta 79




>32093_mmu-mir-465b-1:mirbase
          Length = 79

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 69/81 (85%), Gaps = 2/81 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcaatgccctatttagaatggcgctgatctgatgaatnnnnnnnnnntgatcagggcct 60
          |||||||||||||||||||||| ||||||||||||||           ||||||||||||
Sbjct: 1  tgcaatgccctatttagaatggtgctgatctgatgaa--ataaaaaattgatcagggcct 58

                               
Query: 61 ttctaagtagagtaaggctta 81
          |||||||||||||||||||||
Sbjct: 59 ttctaagtagagtaaggctta 79




>32094_mmu-mir-465b-2:mirbase
          Length = 79

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 69/81 (85%), Gaps = 2/81 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcaatgccctatttagaatggcgctgatctgatgaatnnnnnnnnnntgatcagggcct 60
          |||||||||||||||||||||| ||||||||||||||           ||||||||||||
Sbjct: 1  tgcaatgccctatttagaatggtgctgatctgatgaa--ataaaaaattgatcagggcct 58

                               
Query: 61 ttctaagtagagtaaggctta 81
          |||||||||||||||||||||
Sbjct: 59 ttctaagtagagtaaggctta 79




>32095_mmu-mir-465b-2:mirbase
          Length = 79

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 69/81 (85%), Gaps = 2/81 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcaatgccctatttagaatggcgctgatctgatgaatnnnnnnnnnntgatcagggcct 60
          |||||||||||||||||||||| ||||||||||||||           ||||||||||||
Sbjct: 1  tgcaatgccctatttagaatggtgctgatctgatgaa--ataaaaaattgatcagggcct 58

                               
Query: 61 ttctaagtagagtaaggctta 81
          |||||||||||||||||||||
Sbjct: 59 ttctaagtagagtaaggctta 79




>32090_mmu-mir-465a:mirbase
          Length = 74

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 49 tgatcagggcctttctaagtagagtaaggctta 81
          |||||||||||||||||||||||||||||||||
Sbjct: 41 tgatcagggcctttctaagtagagtaaggctta 73




>32091_mmu-mir-465a:mirbase
          Length = 74

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 49 tgatcagggcctttctaagtagagtaaggctta 81
          |||||||||||||||||||||||||||||||||
Sbjct: 41 tgatcagggcctttctaagtagagtaaggctta 73




>32922_rno-mir-465:mirbase
          Length = 77

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 49 tgatcagggcctttctaagtagagtaaggctta 81
          ||||||| |||||||| ||||||||||||||||
Sbjct: 45 tgatcagtgcctttctgagtagagtaaggctta 77




>28137_mml-mir-890:mirbase
          Length = 72

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 58 cctttctaagtagagtaaggctta 81
          ||||||| ||||||||||||||||
Sbjct: 49 cctttctgagtagagtaaggctta 72